Variant report

Variant	rs10828754
Chromosome Location	chr10:25361122-25361123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:24854730..24857189-chr10:25359782..25362279,2	K562	blood:
2	chr10:25356543..25358700-chr10:25359934..25363281,3	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10764515	0.81[CEU][hapmap]
rs10828750	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10828751	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10828752	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10828755	0.95[ASN][1000 genomes]
rs11014365	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs11014367	0.90[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11014368	0.82[ASN][1000 genomes]
rs11014375	0.90[ASN][1000 genomes]
rs11014379	0.96[ASN][1000 genomes]
rs11014389	0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs12219239	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs12764623	0.92[ASN][1000 genomes]
rs12773782	0.95[ASN][1000 genomes]
rs1352982	0.87[EUR][1000 genomes]
rs1492606	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1492607	0.95[ASN][1000 genomes]
rs1552770	0.96[ASN][1000 genomes]
rs1552771	0.92[ASN][1000 genomes]
rs1907790	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1963584	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2087781	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs2279547	0.81[CEU][hapmap]
rs2367507	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs274304	0.80[CEU][hapmap]
rs274305	0.85[CEU][hapmap]
rs274311	0.85[CEU][hapmap]
rs274313	0.80[CEU][hapmap]
rs274316	0.86[CEU][hapmap]
rs4508094	0.90[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs4749000	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs4749004	0.95[ASN][1000 genomes]
rs4749005	0.94[ASN][1000 genomes]
rs6482468	0.95[CEU][hapmap];0.86[CHB][hapmap];0.88[EUR][1000 genomes]
rs7898431	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs902906	0.90[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs923757	0.91[ASN][1000 genomes]
rs923758	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25358000-25361400	Weak transcription	HUVEC	blood vessel

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