Variant report

Variant	rs11014367
Chromosome Location	chr10:25347926-25347927
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25345062..25348953-chr10:25349936..25353027,4	K562	blood:
2	chr10:25344134..25348116-chr10:25349607..25352644,3	MCF-7	breast:
3	chr10:25306319..25307953-chr10:25346499..25349389,2	MCF-7	breast:
4	chr10:25239858..25243208-chr10:25347592..25352504,4	K562	blood:
5	chr10:25343371..25346299-chr10:25346762..25349074,2	K562	blood:

Variant related genes	Relation type
ENSG00000273107	Chromatin interaction
ENSG00000099256	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10764515	0.87[YRI][hapmap]
rs10828750	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10828751	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10828752	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10828754	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10828755	0.85[ASN][1000 genomes]
rs11014357	0.92[YRI][hapmap]
rs11014365	0.95[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs11014368	0.95[ASN][1000 genomes]
rs11014375	0.92[ASN][1000 genomes]
rs11014379	0.86[ASN][1000 genomes]
rs11014389	0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs12219239	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs12241661	0.89[ASN][1000 genomes]
rs12243641	0.81[ASN][1000 genomes]
rs12764623	0.90[ASN][1000 genomes]
rs12773782	0.86[ASN][1000 genomes]
rs1352982	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1492606	0.82[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs1492607	0.85[ASN][1000 genomes]
rs1552770	0.86[ASN][1000 genomes]
rs1552771	0.90[ASN][1000 genomes]
rs1907790	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1963584	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2087781	0.91[JPT][hapmap]
rs2131275	0.88[ASN][1000 genomes]
rs2279547	0.88[YRI][hapmap]
rs2367507	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4237369	0.89[ASN][1000 genomes]
rs4508094	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4748993	0.88[YRI][hapmap]
rs4749000	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs4749004	0.86[ASN][1000 genomes]
rs4749005	0.85[ASN][1000 genomes]
rs6482468	0.85[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7086282	0.96[YRI][hapmap]
rs7896122	0.89[ASN][1000 genomes]
rs7898431	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7911863	0.89[ASN][1000 genomes]
rs902906	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs923757	0.91[ASN][1000 genomes]
rs923758	0.86[ASN][1000 genomes]
rs987274	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25337400-25348200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:25337600-25348200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:25338200-25348400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:25345200-25349400	Enhancers	Fetal Intestine Small	intestine
5	chr10:25345600-25350600	Enhancers	Fetal Intestine Large	intestine
6	chr10:25346000-25349200	Enhancers	K562	blood
7	chr10:25347200-25350600	Weak transcription	Liver	Liver
8	chr10:25347200-25350600	Weak transcription	Gastric	stomach
9	chr10:25347200-25350800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:25347400-25348200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:25347400-25348400	Weak transcription	Stomach Mucosa	stomach
12	chr10:25347400-25348400	Weak transcription	HepG2	liver
13	chr10:25347400-25348400	Weak transcription	HUVEC	blood vessel
14	chr10:25347600-25348000	Weak transcription	A549	lung
15	chr10:25347600-25348800	Enhancers	Hela-S3	cervix

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