Variant report

Variant	rs4508094
Chromosome Location	chr10:25349287-25349288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25343578..25346366-chr10:25349000..25351556,3	MCF-7	breast:
2	chr10:25306319..25307953-chr10:25346499..25349389,2	MCF-7	breast:
3	chr10:25340489..25343849-chr10:25349173..25351054,3	K562	blood:
4	chr10:25304955..25307281-chr10:25348708..25354586,7	MCF-7	breast:
5	chr10:25341537..25343849-chr10:25349173..25350705,2	K562	blood:
6	chr10:25239858..25243208-chr10:25347592..25352504,4	K562	blood:

Variant related genes	Relation type
ENSG00000273107	Chromatin interaction
ENSG00000185875	Chromatin interaction
ENSG00000099256	Chromatin interaction
ENSG00000151023	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10508685	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs10508686	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs10828745	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs10828747	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10828750	0.99[ASN][1000 genomes]
rs10828751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10828752	0.92[ASN][1000 genomes]
rs10828754	0.83[ASN][1000 genomes]
rs10828755	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11014360	0.89[EUR][1000 genomes]
rs11014361	0.91[EUR][1000 genomes]
rs11014362	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11014365	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11014367	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11014368	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014375	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11014379	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11014389	0.82[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs1124017	0.83[EUR][1000 genomes]
rs12219239	0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs12241661	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12243641	0.84[ASN][1000 genomes]
rs12251969	0.82[YRI][hapmap]
rs12764623	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12773782	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12776058	0.88[EUR][1000 genomes]
rs12784769	0.81[CEU][hapmap]
rs1352982	0.81[ASN][1000 genomes]
rs1352984	0.90[EUR][1000 genomes]
rs1352985	0.91[EUR][1000 genomes]
rs1492606	0.83[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs1492607	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1546097	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs1552770	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1552771	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1907790	0.81[ASN][1000 genomes]
rs1907791	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1963584	0.91[ASN][1000 genomes]
rs2087781	0.91[JPT][hapmap]
rs2131275	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2220707	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2367507	0.91[ASN][1000 genomes]
rs4237369	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4747511	0.91[EUR][1000 genomes]
rs4748999	0.90[EUR][1000 genomes]
rs4749000	0.91[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4749001	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4749004	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4749005	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6482468	0.87[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs7896122	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7898431	0.83[ASN][1000 genomes]
rs7911863	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs902906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs923757	0.92[ASN][1000 genomes]
rs923758	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25345200-25349400	Enhancers	Fetal Intestine Small	intestine
2	chr10:25345600-25350600	Enhancers	Fetal Intestine Large	intestine
3	chr10:25347200-25350600	Weak transcription	Liver	Liver
4	chr10:25347200-25350600	Weak transcription	Gastric	stomach
5	chr10:25347200-25350800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:25348200-25350600	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr10:25348200-25351200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:25348200-25351600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr10:25348200-25352200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:25348400-25349600	Enhancers	Duodenum Mucosa	Duodenum
11	chr10:25348400-25349600	Flanking Active TSS	A549	lung
12	chr10:25348400-25349800	Enhancers	Placenta	Placenta
13	chr10:25348400-25350800	Enhancers	HepG2	liver
14	chr10:25348400-25351000	Enhancers	HMEC	breast
15	chr10:25348400-25351200	Enhancers	HUVEC	blood vessel
16	chr10:25348400-25351600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:25348400-25352200	Enhancers	Stomach Mucosa	stomach
18	chr10:25348400-25352800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:25348600-25349600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr10:25348600-25350000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr10:25348600-25350800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:25348600-25351000	Enhancers	Osteobl	bone
23	chr10:25348800-25349400	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr10:25348800-25349400	Enhancers	NHDF-Ad	bronchial
25	chr10:25348800-25349600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:25348800-25349600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:25348800-25349600	Weak transcription	Aorta	Aorta
28	chr10:25348800-25349600	Enhancers	HSMM	muscle
29	chr10:25348800-25349800	Enhancers	NH-A	brain
30	chr10:25348800-25350800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:25348800-25352000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:25349000-25350000	Weak transcription	Small Intestine	intestine
33	chr10:25349000-25350600	Weak transcription	Lung	lung
34	chr10:25349000-25351200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:25349200-25349400	Enhancers	HSMMtube	muscle
36	chr10:25349200-25349400	Flanking Active TSS	NHEK	skin
37	chr10:25349200-25349600	Flanking Active TSS	K562	blood
38	chr10:25349200-25350600	Enhancers	Hela-S3	cervix
39	chr10:25349200-25350800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:25349200-25351200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:25349200-25351400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:25349200-25351400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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