Variant report

Variant	rs11014362
Chromosome Location	chr10:25338764-25338765
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25338585..25341464-chr10:25343228..25345616,2	K562	blood:
2	chr10:25331770..25334410-chr10:25337603..25339717,2	MCF-7	breast:

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs1000875	0.88[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs10508685	0.92[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10508686	0.96[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10764515	0.83[CHB][hapmap]
rs10764516	0.84[ASN][1000 genomes]
rs10764517	0.83[ASN][1000 genomes]
rs10764518	0.87[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10764519	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs10828740	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10828741	0.85[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10828743	0.81[EUR][1000 genomes]
rs10828744	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10828745	0.92[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10828747	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828750	0.82[ASN][1000 genomes]
rs10828751	0.87[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs10828755	0.86[EUR][1000 genomes]
rs11014347	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11014348	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11014349	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11014350	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11014351	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11014357	0.87[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs11014360	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11014361	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11014365	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014367	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs11014368	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11014375	0.86[EUR][1000 genomes]
rs11014379	0.88[EUR][1000 genomes]
rs1124017	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11593926	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11598879	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12219239	0.87[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs12241661	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12243641	0.83[ASN][1000 genomes]
rs12249889	0.83[CEU][hapmap];0.87[CHB][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12256642	0.83[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12356765	0.84[ASN][1000 genomes]
rs12764623	0.89[EUR][1000 genomes]
rs12773782	0.88[EUR][1000 genomes]
rs12776058	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12784769	0.88[CEU][hapmap];0.84[CHB][hapmap]
rs1352982	0.98[ASN][1000 genomes]
rs1352984	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1352985	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1492607	0.89[EUR][1000 genomes]
rs1492608	0.87[CHB][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1546097	0.92[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1552770	0.89[EUR][1000 genomes]
rs1552771	0.89[EUR][1000 genomes]
rs1907791	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1963584	0.90[ASN][1000 genomes]
rs2087782	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2131275	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2131276	0.83[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2131277	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2220707	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2291583	0.83[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs2291584	0.84[ASN][1000 genomes]
rs2291585	0.84[ASN][1000 genomes]
rs2291586	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2307047	0.84[CEU][hapmap]
rs2367506	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2367507	0.90[ASN][1000 genomes]
rs274301	0.84[CHB][hapmap]
rs4237369	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4345864	0.83[CEU][hapmap];0.88[CHB][hapmap];0.84[EUR][1000 genomes]
rs4508094	0.92[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4747509	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4747510	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4747511	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4748993	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs4748996	0.87[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs4748997	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4748998	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4748999	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4749000	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4749001	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749004	0.88[EUR][1000 genomes]
rs4749005	0.88[EUR][1000 genomes]
rs56192563	0.83[ASN][1000 genomes]
rs6482467	0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs6482468	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7082131	0.82[ASN][1000 genomes]
rs7086282	0.87[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs7095364	0.84[ASN][1000 genomes]
rs7393543	0.87[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs7896122	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7898431	0.83[ASN][1000 genomes]
rs7911863	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7913853	0.83[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs902903	0.81[CEU][hapmap]
rs902904	0.83[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs902905	0.83[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs902906	0.91[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs923758	0.89[EUR][1000 genomes]
rs950609	0.83[ASN][1000 genomes]
rs987274	0.88[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25337400-25348200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:25337600-25348200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:25337800-25339400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:25338000-25341000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:25338200-25338800	Weak transcription	Fetal Intestine Small	intestine
6	chr10:25338200-25340400	Weak transcription	Fetal Intestine Large	intestine
7	chr10:25338200-25348400	Weak transcription	Duodenum Mucosa	Duodenum

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