Variant report

Variant	rs12241661
Chromosome Location	chr10:25341824-25341825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25341537..25343849-chr10:25349173..25350705,2	K562	blood:
2	chr10:25340489..25343849-chr10:25349173..25351054,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10508685	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10508686	0.82[EUR][1000 genomes]
rs10828745	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10828747	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10828750	0.91[ASN][1000 genomes]
rs10828751	0.91[ASN][1000 genomes]
rs10828752	0.85[ASN][1000 genomes]
rs10828755	0.83[EUR][1000 genomes]
rs11014360	0.81[EUR][1000 genomes]
rs11014361	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11014362	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014365	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014367	0.89[ASN][1000 genomes]
rs11014368	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11014375	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11014379	0.84[EUR][1000 genomes]
rs1124017	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12243641	0.92[ASN][1000 genomes]
rs12764623	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12773782	0.84[EUR][1000 genomes]
rs12776058	0.80[EUR][1000 genomes]
rs1352982	0.88[ASN][1000 genomes]
rs1352984	0.82[EUR][1000 genomes]
rs1352985	0.83[EUR][1000 genomes]
rs1492607	0.85[EUR][1000 genomes]
rs1546097	0.89[EUR][1000 genomes]
rs1552770	0.85[EUR][1000 genomes]
rs1552771	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1907791	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1963584	0.99[ASN][1000 genomes]
rs2131275	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2220707	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2367507	0.99[ASN][1000 genomes]
rs4237369	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4508094	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4747511	0.83[EUR][1000 genomes]
rs4748999	0.82[EUR][1000 genomes]
rs4749000	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4749001	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4749004	0.84[EUR][1000 genomes]
rs4749005	0.84[EUR][1000 genomes]
rs6482468	0.88[ASN][1000 genomes]
rs7896122	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898431	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7911863	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs902906	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs923757	0.84[ASN][1000 genomes]
rs923758	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25337400-25348200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:25337600-25348200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:25338200-25348400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:25341000-25345600	Weak transcription	Fetal Intestine Large	intestine
5	chr10:25341200-25345800	Weak transcription	Liver	Liver
6	chr10:25341400-25342000	Genic enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links