Variant report

Variant	rs10508686
Chromosome Location	chr10:25327062-25327063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25305567..25307073-chr10:25326755..25328521,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs1000875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10508685	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764515	0.95[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs10764516	0.97[ASN][1000 genomes]
rs10764517	0.98[ASN][1000 genomes]
rs10764518	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764519	1.00[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs10828740	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828741	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828743	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10828744	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828745	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828747	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10828755	0.85[EUR][1000 genomes]
rs11014347	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014348	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014349	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014350	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11014351	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11014357	1.00[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11014360	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014361	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014362	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11014365	0.87[CEU][hapmap];0.93[GIH][hapmap];0.83[JPT][hapmap];0.90[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11014368	0.87[EUR][1000 genomes]
rs11014375	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11014379	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1124017	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593926	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11598879	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12219239	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs12241661	0.82[EUR][1000 genomes]
rs12249889	0.91[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12256642	0.81[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];0.85[TSI][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12356765	0.99[ASN][1000 genomes]
rs12761282	0.80[ASN][1000 genomes]
rs12764623	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12769388	0.90[ASN][1000 genomes]
rs12773782	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12776058	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12784769	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs1352982	0.86[ASN][1000 genomes]
rs1352984	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1352985	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1492607	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1492608	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.80[TSI][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1546097	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1552770	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1552771	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1907791	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2087782	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2131275	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2131276	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2131277	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2220707	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2279547	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs2291583	0.83[ASW][hapmap];0.83[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.97[ASN][1000 genomes]
rs2291584	0.99[ASN][1000 genomes]
rs2291585	0.99[ASN][1000 genomes]
rs2291586	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2307047	0.88[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.81[ASN][1000 genomes]
rs2367506	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs274301	0.95[CHB][hapmap]
rs274305	0.81[CHB][hapmap]
rs274311	0.82[CHB][hapmap];0.88[CHD][hapmap]
rs274313	0.82[CHB][hapmap]
rs4237369	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4345864	0.87[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4508094	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs4747509	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4747510	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4747511	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748993	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4748994	0.89[ASN][1000 genomes]
rs4748996	0.83[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.99[ASN][1000 genomes]
rs4748997	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4748998	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4748999	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749000	0.96[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4749001	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4749004	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4749005	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56192563	0.98[ASN][1000 genomes]
rs60251099	0.84[ASN][1000 genomes]
rs6482467	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs6482468	0.87[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs7082131	0.97[ASN][1000 genomes]
rs7086282	1.00[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7095364	0.99[ASN][1000 genomes]
rs7393543	1.00[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7896122	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7911863	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7913853	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs902903	0.84[CEU][hapmap];0.81[ASN][1000 genomes]
rs902904	0.81[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs902905	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs902906	0.87[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes]
rs923758	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs950609	0.98[ASN][1000 genomes]
rs987274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10508686	THNSL1	cis	parietal	SCAN
rs10508686	THNSL1	cis	cerebellum	SCAN
rs10508686	PIP4K2A	cis	parietal	SCAN
rs10508686	ENKUR	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25326000-25327200	Weak transcription	Aorta	Aorta
2	chr10:25326600-25327800	Enhancers	HUVEC	blood vessel
3	chr10:25326600-25336200	Weak transcription	Fetal Intestine Small	intestine

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