Variant report

Variant	rs12769388
Chromosome Location	chr10:25316273-25316274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25304238..25308721-chr10:25308828..25316334,14	MCF-7	breast:
2	chr10:25310470..25312608-chr10:25316004..25319067,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction
ENSG00000151023	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1000875	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10508685	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10508686	0.90[ASN][1000 genomes]
rs10764516	0.88[ASN][1000 genomes]
rs10764517	0.89[ASN][1000 genomes]
rs10764518	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828740	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828741	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828744	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828745	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014347	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11014348	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11014349	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11014350	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014351	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11014357	0.90[ASN][1000 genomes]
rs11014360	0.90[ASN][1000 genomes]
rs11014361	0.80[ASN][1000 genomes]
rs1124017	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11593926	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11598879	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12249889	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12256642	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12356765	0.90[ASN][1000 genomes]
rs12776058	0.91[ASN][1000 genomes]
rs12784769	0.80[ASN][1000 genomes]
rs1352984	0.89[ASN][1000 genomes]
rs1352985	0.90[ASN][1000 genomes]
rs1492608	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1546097	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2087782	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2131276	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2131277	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2291583	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2291584	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2291585	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2291586	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2367506	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4345864	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4747509	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4747510	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4747511	0.90[ASN][1000 genomes]
rs4748993	0.84[ASN][1000 genomes]
rs4748994	0.80[ASN][1000 genomes]
rs4748996	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4748997	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4748998	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4748999	0.90[ASN][1000 genomes]
rs56192563	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6482467	0.87[ASN][1000 genomes]
rs7082131	0.89[ASN][1000 genomes]
rs7086282	0.90[ASN][1000 genomes]
rs7095364	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7393543	0.90[ASN][1000 genomes]
rs7913853	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs902904	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs902905	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs950609	0.89[ASN][1000 genomes]
rs987274	0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12769388	THNSL1	cis	brain	BrainEAC

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25306600-25316400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr10:25307000-25316400	Weak transcription	Brain Germinal Matrix	brain
3	chr10:25307000-25316800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr10:25307000-25317000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:25307000-25317000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:25307000-25325400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:25307600-25316400	Weak transcription	Primary B cells from cord blood	blood
8	chr10:25312800-25316600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:25313800-25317200	Weak transcription	Osteobl	bone
10	chr10:25314200-25317200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:25314400-25317200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:25314400-25317600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:25315200-25317000	Weak transcription	Primary T cells from cord blood	blood
14	chr10:25315400-25317600	Weak transcription	Liver	Liver
15	chr10:25315800-25317400	Weak transcription	NHDF-Ad	bronchial
16	chr10:25316000-25317600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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