The 2.0 version of rSNPBase

Variant report

Variant rs11598879
Chromosome Location chr10:25307353-25307354
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:25304600-25307400 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr10:25306200-25307400 Flanking Active TSS Dnd41 blood
3 chr10:25306400-25312400 Weak transcription Ovary ovary
4 chr10:25306600-25307400 Enhancers Primary B cells from peripheral blood blood
5 chr10:25306600-25307400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
6 chr10:25306600-25307400 Enhancers Primary T helper 17 cells PMA-I stimulated --
7 chr10:25306600-25307400 Enhancers Primary T killer naive cells fromperipheralblood blood
8 chr10:25306600-25307400 Flanking Active TSS Liver Liver
9 chr10:25306600-25307400 Enhancers Brain Anterior Caudate brain
10 chr10:25306600-25307400 Enhancers Fetal Adrenal Gland Adrenal Gland
11 chr10:25306600-25307400 Enhancers Fetal Intestine Large intestine
12 chr10:25306600-25307400 Enhancers Fetal Intestine Small intestine
13 chr10:25306600-25307400 Enhancers HepG2 liver
14 chr10:25306600-25307600 Enhancers Primary B cells from cord blood blood
15 chr10:25306600-25307600 Enhancers Primary T killer memory cells from peripheral blood blood
16 chr10:25306600-25307600 Enhancers Brain Substantia Nigra brain
17 chr10:25306600-25307600 Enhancers Sigmoid Colon Sigmoid Colon
18 chr10:25306600-25307600 Flanking Active TSS K562 blood
19 chr10:25306600-25308000 Enhancers Breast Myoepithelial Primary Cells Breast
20 chr10:25306600-25308000 Enhancers Primary T helper naive cells fromperipheralblood blood
21 chr10:25306600-25309400 Weak transcription Pancreas Pancrea
22 chr10:25306600-25312000 Weak transcription Adipose Nuclei Adipose
23 chr10:25306600-25314000 Weak transcription Fetal Muscle Leg muscle
24 chr10:25306600-25315400 Weak transcription NHDF-Ad bronchial
25 chr10:25306600-25316400 Weak transcription Skeletal Muscle Female skeletal muscle
26 chr10:25306800-25307400 Enhancers Brain Cingulate Gyrus brain
27 chr10:25306800-25307600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr10:25306800-25307600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr10:25306800-25307600 Enhancers Brain Hippocampus Middle brain
30 chr10:25306800-25307600 Enhancers Fetal Brain Female brain
31 chr10:25307000-25307400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr10:25307000-25307400 Enhancers Primary hematopoietic stem cells short term culture blood
33 chr10:25307000-25307400 Enhancers Primary T helper cells PMA-I stimulated --
34 chr10:25307000-25307400 Enhancers Primary T helper cells fromperipheralblood blood
35 chr10:25307000-25307400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr10:25307000-25307400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
37 chr10:25307000-25307400 Enhancers Pancreatic Islets Pancreatic Islet
38 chr10:25307000-25307400 Enhancers Fetal Lung lung
39 chr10:25307000-25307600 Active TSS GM12878-XiMat blood
40 chr10:25307000-25308000 Weak transcription Brain Angular Gyrus brain
41 chr10:25307000-25308400 Weak transcription Primary T helper naive cells from peripheral blood blood
42 chr10:25307000-25311000 Weak transcription HUVEC blood vessel
43 chr10:25307000-25313200 Weak transcription Osteobl bone
44 chr10:25307000-25314400 Weak transcription Fetal Kidney kidney
45 chr10:25307000-25316400 Weak transcription Brain Germinal Matrix brain
46 chr10:25307000-25316800 Weak transcription Primary T cells fromperipheralblood blood
47 chr10:25307000-25317000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
48 chr10:25307000-25317000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
49 chr10:25307000-25325400 Weak transcription Primary hematopoietic stem cells blood
50 chr10:25307200-25307400 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015