Variant report

Variant	rs2031600
Chromosome Location	chr10:25258244-25258245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25241659..25243537-chr10:25257631..25261470,3	K562	blood:
2	chr10:25253127..25256241-chr10:25256724..25259023,3	K562	blood:
3	chr10:25253735..25256241-chr10:25257009..25259023,2	K562	blood:

Variant related genes	Relation type
ENSG00000273107	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1000875	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs10508685	0.91[CHB][hapmap]
rs10508686	0.91[CHB][hapmap]
rs10764515	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10764516	0.81[ASN][1000 genomes]
rs10764517	0.81[ASN][1000 genomes]
rs10764518	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs10764519	0.81[CEU][hapmap];0.91[CHB][hapmap]
rs10828740	0.80[ASN][1000 genomes]
rs10828741	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs10828744	0.80[ASN][1000 genomes]
rs10828745	0.91[CHB][hapmap]
rs10828751	0.85[CEU][hapmap]
rs11014318	0.82[JPT][hapmap]
rs11014347	0.80[ASN][1000 genomes]
rs11014348	0.80[ASN][1000 genomes]
rs11014349	0.80[ASN][1000 genomes]
rs11014357	0.81[CEU][hapmap];0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs11593926	0.80[ASN][1000 genomes]
rs11598879	0.80[ASN][1000 genomes]
rs12249889	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs12256642	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs12356765	0.81[ASN][1000 genomes]
rs12761282	0.94[ASN][1000 genomes]
rs12776058	0.80[ASN][1000 genomes]
rs12784769	0.82[CEU][hapmap];0.96[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1492608	0.91[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs1546097	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs166670	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16925207	0.81[ASN][1000 genomes]
rs185669	0.80[CEU][hapmap]
rs2035888	0.81[JPT][hapmap]
rs2087782	0.80[ASN][1000 genomes]
rs2131276	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs2131277	0.80[ASN][1000 genomes]
rs2279547	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2291583	0.86[CHB][hapmap]
rs2291586	0.80[ASN][1000 genomes]
rs2307047	0.85[CEU][hapmap];0.83[CHB][hapmap];0.82[ASN][1000 genomes]
rs2367506	0.80[ASN][1000 genomes]
rs2478091	0.80[ASN][1000 genomes]
rs274288	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs274289	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs274290	0.93[ASN][1000 genomes]
rs274291	0.88[ASN][1000 genomes]
rs274292	0.88[ASN][1000 genomes]
rs274293	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs274294	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs274301	0.92[CEU][hapmap];0.96[CHB][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs274304	0.81[CEU][hapmap]
rs274305	0.84[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs274307	0.88[ASN][1000 genomes]
rs274310	0.88[ASN][1000 genomes]
rs274311	0.84[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs274313	0.83[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs274316	0.85[CEU][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2818289	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4345864	0.91[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs4556443	0.89[EUR][1000 genomes]
rs4747509	0.80[ASN][1000 genomes]
rs4747510	0.80[ASN][1000 genomes]
rs4748993	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs4748996	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs4748997	0.80[ASN][1000 genomes]
rs4748998	0.80[ASN][1000 genomes]
rs612482	0.86[ASN][1000 genomes]
rs6482467	0.91[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs6482468	0.89[CEU][hapmap];0.80[CHB][hapmap]
rs7082131	0.82[ASN][1000 genomes]
rs7086282	0.81[CEU][hapmap];0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs7095364	0.80[ASN][1000 genomes]
rs7393543	0.81[CEU][hapmap];0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs7913853	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs902903	0.89[CEU][hapmap];0.82[ASN][1000 genomes]
rs902904	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs902905	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs950609	0.81[ASN][1000 genomes]
rs987274	0.82[CEU][hapmap];0.91[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3377854	chr10:25254646-25258844	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25249200-25258600	Weak transcription	Brain Anterior Caudate	brain
2	chr10:25249200-25258600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:25249200-25262200	Weak transcription	Fetal Stomach	stomach
4	chr10:25249200-25263800	Weak transcription	Ovary	ovary
5	chr10:25251000-25263800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:25253200-25262000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:25253200-25264000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:25256400-25264400	Weak transcription	Gastric	stomach
9	chr10:25257000-25259000	Weak transcription	Fetal Kidney	kidney
10	chr10:25257600-25258600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:25257800-25259600	Enhancers	Fetal Muscle Leg	muscle
12	chr10:25258200-25259400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:25258200-25259400	Enhancers	Osteobl	bone
14	chr10:25258200-25259800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:25258200-25260800	Enhancers	NHDF-Ad	bronchial

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