Variant report

Variant	rs2087782
Chromosome Location	chr10:25301082-25301083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25241117..25243872-chr10:25301053..25303469,2	K562	blood:

Variant related genes	Relation type
ENSG00000099256	Chromatin interaction
ENSG00000273107	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1000875	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508685	0.99[ASN][1000 genomes]
rs10508686	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764515	0.85[ASN][1000 genomes]
rs10764516	0.97[ASN][1000 genomes]
rs10764517	0.99[ASN][1000 genomes]
rs10764518	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828740	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828741	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828743	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10828744	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828745	0.99[ASN][1000 genomes]
rs10828747	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11014347	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014348	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014349	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014350	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014351	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11014357	0.99[ASN][1000 genomes]
rs11014360	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014361	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014362	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1124017	0.99[ASN][1000 genomes]
rs11593926	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598879	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249889	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256642	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12356765	0.99[ASN][1000 genomes]
rs12761282	0.81[ASN][1000 genomes]
rs12769388	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12776058	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12781953	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12784769	0.89[ASN][1000 genomes]
rs1352982	0.85[ASN][1000 genomes]
rs1352984	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1352985	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1492608	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1546097	1.00[ASN][1000 genomes]
rs1907791	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2031600	0.80[ASN][1000 genomes]
rs2131276	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2131277	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220707	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2279547	0.88[ASN][1000 genomes]
rs2291583	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2291584	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2291585	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2291586	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2307047	0.81[ASN][1000 genomes]
rs2367506	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs274290	0.80[ASN][1000 genomes]
rs4345864	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4747509	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747510	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747511	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4748993	0.92[ASN][1000 genomes]
rs4748994	0.89[ASN][1000 genomes]
rs4748996	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748997	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748998	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748999	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4749000	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4749001	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56192563	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60251099	0.84[ASN][1000 genomes]
rs6482467	0.96[ASN][1000 genomes]
rs6482468	0.85[ASN][1000 genomes]
rs7082131	0.98[ASN][1000 genomes]
rs7086282	0.99[ASN][1000 genomes]
rs7095364	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7393543	0.99[ASN][1000 genomes]
rs7913853	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs902903	0.81[ASN][1000 genomes]
rs902904	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs902905	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs950609	0.99[ASN][1000 genomes]
rs987274	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418576	chr10:25295995-25311122	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
2	esv3389100	chr10:25297446-25301744	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25300200-25304800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:25300800-25301400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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