Variant report

Variant	rs11014361
Chromosome Location	chr10:25330138-25330139
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25323935..25325492-chr10:25329192..25331957,2	K562	blood:
2	chr10:25328706..25331645-chr10:25332018..25334626,4	K562	blood:
3	chr10:25329304..25331383-chr10:25344755..25346865,2	K562	blood:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs1000875	0.87[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs10508685	0.96[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10508686	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10764515	0.83[CHB][hapmap]
rs10764516	0.87[ASN][1000 genomes]
rs10764517	0.88[ASN][1000 genomes]
rs10764518	0.91[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10764519	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs10828740	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10828741	0.85[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10828743	0.82[EUR][1000 genomes]
rs10828744	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10828745	0.96[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10828747	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10828751	0.87[CHB][hapmap]
rs10828755	0.85[EUR][1000 genomes]
rs11014347	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014348	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014349	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014350	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11014351	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11014357	0.87[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs11014360	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014362	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11014365	0.87[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11014367	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs11014368	0.88[EUR][1000 genomes]
rs11014375	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11014379	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1124017	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11593926	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11598879	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12219239	0.83[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs12241661	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12249889	0.87[CEU][hapmap];0.86[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12256642	0.87[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12356765	0.89[ASN][1000 genomes]
rs12764623	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12769388	0.80[ASN][1000 genomes]
rs12773782	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12776058	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12784769	0.92[CEU][hapmap];0.83[CHB][hapmap]
rs1352982	0.95[ASN][1000 genomes]
rs1352984	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1352985	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1492607	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1492608	0.83[CEU][hapmap];0.87[CHB][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1546097	0.96[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1552770	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1552771	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1907791	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1963584	0.85[ASN][1000 genomes]
rs2087782	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2131275	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2131276	0.87[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2131277	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2220707	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2291583	0.83[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs2291584	0.89[ASN][1000 genomes]
rs2291585	0.89[ASN][1000 genomes]
rs2291586	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2307047	0.88[CEU][hapmap]
rs2367506	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2367507	0.85[ASN][1000 genomes]
rs274301	0.83[CHB][hapmap]
rs4237369	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4345864	0.88[CEU][hapmap];0.87[CHB][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4508094	0.88[CEU][hapmap];0.87[CHB][hapmap];0.91[EUR][1000 genomes]
rs4747509	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4747510	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4747511	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4748993	0.83[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs4748996	0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs4748997	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4748998	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4748999	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4749000	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4749001	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4749004	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4749005	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56192563	0.88[ASN][1000 genomes]
rs6482467	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs6482468	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs7082131	0.87[ASN][1000 genomes]
rs7086282	0.87[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs7095364	0.89[ASN][1000 genomes]
rs7393543	0.87[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs7896122	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7911863	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7913853	0.88[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs902903	0.85[CEU][hapmap]
rs902904	0.87[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs902905	0.88[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs902906	0.87[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes]
rs923758	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs950609	0.88[ASN][1000 genomes]
rs987274	0.87[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25326600-25336200	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links