Variant report

Variant	rs2367507
Chromosome Location	chr10:25343606-25343607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25343578..25346366-chr10:25349000..25351556,3	MCF-7	breast:
2	chr10:25343371..25346299-chr10:25346762..25349074,2	K562	blood:
3	chr10:25341537..25343849-chr10:25349173..25350705,2	K562	blood:
4	chr10:25340489..25343849-chr10:25349173..25351054,3	K562	blood:
5	chr10:25338585..25341464-chr10:25343228..25345616,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1000875	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs10508685	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs10508686	0.83[JPT][hapmap]
rs10764515	0.85[CEU][hapmap]
rs10764518	0.80[CHB][hapmap];0.80[JPT][hapmap]
rs10764519	0.83[JPT][hapmap]
rs10828741	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs10828745	0.80[JPT][hapmap]
rs10828747	0.90[ASN][1000 genomes]
rs10828750	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10828751	1.00[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10828752	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10828754	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014357	0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11014361	0.85[ASN][1000 genomes]
rs11014362	0.90[ASN][1000 genomes]
rs11014365	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11014367	0.89[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014368	0.90[ASN][1000 genomes]
rs11014375	0.84[ASN][1000 genomes]
rs12219239	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12241661	0.99[ASN][1000 genomes]
rs12243641	0.91[ASN][1000 genomes]
rs12249889	0.83[CHB][hapmap]
rs12256642	0.83[JPT][hapmap]
rs12356765	0.80[AMR][1000 genomes]
rs12764623	0.82[ASN][1000 genomes]
rs1352982	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1546097	0.83[JPT][hapmap]
rs1552771	0.82[ASN][1000 genomes]
rs185669	0.80[CEU][hapmap]
rs1907790	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1907791	0.88[ASN][1000 genomes]
rs1963584	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2087781	0.84[CEU][hapmap]
rs2131275	0.99[ASN][1000 genomes]
rs2131276	0.80[CHB][hapmap]
rs2220707	0.88[ASN][1000 genomes]
rs2279547	0.85[CEU][hapmap]
rs2291583	0.83[JPT][hapmap]
rs274304	0.81[CEU][hapmap]
rs274305	0.84[CEU][hapmap]
rs274311	0.85[CEU][hapmap]
rs274316	0.85[CEU][hapmap]
rs4237369	0.99[ASN][1000 genomes]
rs4345864	0.80[CHB][hapmap]
rs4508094	0.96[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs4748993	0.83[JPT][hapmap]
rs4748996	0.83[JPT][hapmap]
rs4749000	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4749001	0.90[ASN][1000 genomes]
rs6482467	0.80[CHB][hapmap]
rs6482468	0.96[CEU][hapmap];0.92[CHB][hapmap];0.96[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7086282	0.83[JPT][hapmap]
rs7393543	0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7896122	0.99[ASN][1000 genomes]
rs7898431	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7911863	0.99[ASN][1000 genomes]
rs7913853	0.80[CHB][hapmap];0.80[JPT][hapmap]
rs902904	0.83[JPT][hapmap]
rs902905	0.80[CHB][hapmap];0.80[JPT][hapmap]
rs902906	0.95[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs923757	0.83[ASN][1000 genomes]
rs987274	0.81[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25337400-25348200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:25337600-25348200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:25338200-25348400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:25341000-25345600	Weak transcription	Fetal Intestine Large	intestine
5	chr10:25341200-25345800	Weak transcription	Liver	Liver
6	chr10:25342000-25345200	Weak transcription	Fetal Intestine Small	intestine

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