Variant report

Variant	rs4748993
Chromosome Location	chr10:25300544-25300545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1000875	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10508685	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10508686	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10764515	0.80[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs10764516	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10764517	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10764518	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10764519	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10828740	0.92[ASN][1000 genomes]
rs10828741	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10828744	0.92[ASN][1000 genomes]
rs10828745	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10828751	0.88[YRI][hapmap]
rs11014347	0.92[ASN][1000 genomes]
rs11014348	0.92[ASN][1000 genomes]
rs11014349	0.92[ASN][1000 genomes]
rs11014350	0.91[ASN][1000 genomes]
rs11014351	0.89[ASN][1000 genomes]
rs11014357	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11014360	0.91[ASN][1000 genomes]
rs11014361	0.81[ASN][1000 genomes]
rs11014365	0.86[JPT][hapmap]
rs11014367	0.88[YRI][hapmap]
rs1124017	0.91[ASN][1000 genomes]
rs11593926	0.92[ASN][1000 genomes]
rs11598879	0.92[ASN][1000 genomes]
rs12219239	0.81[JPT][hapmap]
rs12249889	0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs12256642	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12356765	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12769388	0.84[ASN][1000 genomes]
rs12776058	0.92[ASN][1000 genomes]
rs12784769	0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1352984	0.90[ASN][1000 genomes]
rs1352985	0.91[ASN][1000 genomes]
rs1492608	0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs1546097	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2087782	0.92[ASN][1000 genomes]
rs2131276	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2131277	0.92[ASN][1000 genomes]
rs2279547	0.81[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs2291583	0.83[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2291584	0.91[ASN][1000 genomes]
rs2291585	0.91[ASN][1000 genomes]
rs2291586	0.92[ASN][1000 genomes]
rs2367506	0.92[ASN][1000 genomes]
rs274301	0.91[CHB][hapmap]
rs274311	0.80[CEU][hapmap]
rs274316	0.81[CEU][hapmap]
rs4345864	0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs4747509	0.92[ASN][1000 genomes]
rs4747510	0.92[ASN][1000 genomes]
rs4747511	0.91[ASN][1000 genomes]
rs4748994	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4748996	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4748997	0.92[ASN][1000 genomes]
rs4748998	0.92[ASN][1000 genomes]
rs4748999	0.91[ASN][1000 genomes]
rs4749000	0.85[JPT][hapmap]
rs56192563	0.91[ASN][1000 genomes]
rs6482467	0.88[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6482468	0.84[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.84[YRI][hapmap]
rs7082131	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7086282	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7095364	0.92[ASN][1000 genomes]
rs7393543	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7913853	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs902904	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs902905	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs950609	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs987274	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418576	chr10:25295995-25311122	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
2	esv3389100	chr10:25297446-25301744	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25295200-25300800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:25300200-25304800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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