Variant report

Variant	rs1546097
Chromosome Location	chr10:25323839-25323840
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25317292..25320600-chr10:25323318..25325641,3	K562	blood:
2	chr10:25304107..25305905-chr10:25323528..25325426,2	K562	blood:
3	chr10:25316591..25319353-chr10:25320878..25324829,4	K562	blood:
4	chr10:24931961..24934687-chr10:25321404..25323893,2	K562	blood:

Variant related genes	Relation type
ENSG00000151023	Chromatin interaction
ENSG00000185875	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1000875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10508686	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764515	0.95[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs10764516	0.97[ASN][1000 genomes]
rs10764517	0.99[ASN][1000 genomes]
rs10764518	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764519	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap]
rs10828740	1.00[ASN][1000 genomes]
rs10828741	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828743	0.88[ASN][1000 genomes]
rs10828744	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828747	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11014347	1.00[ASN][1000 genomes]
rs11014348	1.00[ASN][1000 genomes]
rs11014349	1.00[ASN][1000 genomes]
rs11014350	0.99[ASN][1000 genomes]
rs11014351	0.97[ASN][1000 genomes]
rs11014357	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11014360	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014361	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014362	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11014365	0.84[CEU][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs1124017	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11593926	1.00[ASN][1000 genomes]
rs11598879	1.00[ASN][1000 genomes]
rs12219239	0.82[JPT][hapmap]
rs12241661	0.89[EUR][1000 genomes]
rs12249889	0.84[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap];1.00[ASN][1000 genomes]
rs12256642	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[ASN][1000 genomes]
rs12356765	0.99[ASN][1000 genomes]
rs12761282	0.81[ASN][1000 genomes]
rs12769388	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12776058	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12784769	0.87[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs1352982	0.85[ASN][1000 genomes]
rs1352984	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1352985	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1492608	1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.99[ASN][1000 genomes]
rs1907791	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2031600	0.80[ASN][1000 genomes]
rs2087782	1.00[ASN][1000 genomes]
rs2131275	0.83[EUR][1000 genomes]
rs2131276	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2131277	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220707	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2279547	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs2291583	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2291584	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2291585	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2291586	1.00[ASN][1000 genomes]
rs2307047	0.84[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.81[ASN][1000 genomes]
rs2367506	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs274290	0.80[ASN][1000 genomes]
rs274301	0.95[CHB][hapmap]
rs274305	0.81[CHB][hapmap]
rs274311	0.82[CHB][hapmap];0.91[CHD][hapmap]
rs274313	0.82[CHB][hapmap]
rs4237369	0.81[EUR][1000 genomes]
rs4345864	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs4508094	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs4747509	1.00[ASN][1000 genomes]
rs4747510	1.00[ASN][1000 genomes]
rs4747511	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4748993	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4748994	0.89[ASN][1000 genomes]
rs4748996	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748997	1.00[ASN][1000 genomes]
rs4748998	1.00[ASN][1000 genomes]
rs4748999	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4749000	0.92[CEU][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4749001	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56192563	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60251099	0.84[ASN][1000 genomes]
rs6482467	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs6482468	0.80[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs7082131	0.98[ASN][1000 genomes]
rs7086282	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7095364	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7393543	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7896122	0.80[EUR][1000 genomes]
rs7911863	0.81[EUR][1000 genomes]
rs7913853	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs902903	0.88[CEU][hapmap];0.81[ASN][1000 genomes]
rs902904	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs902905	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs902906	0.84[CEU][hapmap];0.95[GIH][hapmap]
rs950609	0.99[ASN][1000 genomes]
rs987274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1546097	OTUD1	cis	parietal	SCAN
rs1546097	THNSL1	cis	cerebellum	SCAN
rs1546097	PIP4K2A	cis	parietal	SCAN
rs1546097	ENKUR	cis	parietal	SCAN
rs1546097	THNSL1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25307000-25325400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:25320400-25325400	Weak transcription	Liver	Liver

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