Variant report

Variant	rs4747510
Chromosome Location	chr10:25306527-25306528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr10:25305510-25306529	GM12878	blood:	n/a	n/a
2	POLR2A	chr10:25304869-25306829	IMR90	lung:	n/a	n/a
3	E2F6	chr10:25304899-25307215	H1-hESC	embryonic stem cell:	n/a	chr10:25306779-25306786 chr10:25305948-25305960 chr10:25306779-25306786 chr10:25306775-25306782 chr10:25306774-25306785 chr10:25306775-25306783 chr10:25306778-25306787 chr10:25306775-25306786 chr10:25306774-25306784 chr10:25305337-25305346 chr10:25306775-25306783 chr10:25306779-25306786
4	POLR2A	chr10:25305287-25306712	GM12892	blood:	n/a	n/a
5	POLR2A	chr10:25304961-25306994	GM12878	blood:	n/a	n/a
6	POLR2A	chr10:25305065-25306527	HUVEC	blood vessel:	n/a	n/a
7	POLR2A	chr10:25305009-25306528	SK-N-MC	brain:	n/a	n/a
8	POLR2A	chr10:25305100-25306764	GM12878	blood:	n/a	n/a
9	RCOR1	chr10:25304835-25306809	K562	blood:	n/a	n/a
10	MYC	chr10:25304907-25306605	MCF10A-Er-Src	breast:	n/a	chr10:25305892-25305901 chr10:25305505-25305514 chr10:25305500-25305519 chr10:25305507-25305523 chr10:25305504-25305515 chr10:25305919-25305929
11	POLR2A	chr10:25305049-25306600	U87	brain:	n/a	n/a
12	POLR2A	chr10:25305248-25306739	Hela-S3	cervix:	n/a	n/a
13	TBL1XR1	chr10:25304939-25306885	K562	blood:	n/a	n/a
14	POLR2A	chr10:25305161-25306978	K562	blood:	n/a	n/a
15	MAX	chr10:25304716-25306533	HCT-116	colon:	n/a	chr10:25305892-25305901 chr10:25305505-25305514 chr10:25305500-25305519 chr10:25305507-25305523 chr10:25305504-25305515 chr10:25305919-25305929
16	HEY1	chr10:25305242-25306585	HepG2	liver:	n/a	n/a
17	E2F6	chr10:25306381-25306982	K562	blood:	n/a	chr10:25306779-25306786 chr10:25306779-25306786 chr10:25306775-25306782 chr10:25306774-25306785 chr10:25306775-25306783 chr10:25306778-25306787 chr10:25306775-25306786 chr10:25306774-25306784 chr10:25306775-25306783 chr10:25306779-25306786
18	POLR2A	chr10:25305256-25306590	GM18951	blood:	n/a	n/a
19	CBX3	chr10:25304897-25306553	K562	blood:	n/a	n/a
20	POLR2A	chr10:25304899-25307365	K562	blood:	n/a	n/a
21	POLR2A	chr10:25305286-25306579	GM15510	blood:	n/a	n/a
22	MAX	chr10:25304727-25306564	A549	lung:	n/a	chr10:25305892-25305901 chr10:25305505-25305514 chr10:25305500-25305519 chr10:25305507-25305523 chr10:25305504-25305515 chr10:25305919-25305929
23	E2F6	chr10:25305048-25307099	A549	lung:	n/a	chr10:25306779-25306786 chr10:25305948-25305960 chr10:25306779-25306786 chr10:25306775-25306782 chr10:25306774-25306785 chr10:25306775-25306783 chr10:25306778-25306787 chr10:25306775-25306786 chr10:25306774-25306784 chr10:25305337-25305346 chr10:25306775-25306783 chr10:25306779-25306786
24	RUNX3	chr10:25305156-25306545	GM12878	blood:	n/a	chr10:25305316-25305331
25	E2F6	chr10:25304979-25307387	K562	blood:	n/a	chr10:25306779-25306786 chr10:25305948-25305960 chr10:25306779-25306786 chr10:25306775-25306782 chr10:25306774-25306785 chr10:25306775-25306783 chr10:25306778-25306787 chr10:25306775-25306786 chr10:25306774-25306784 chr10:25305337-25305346 chr10:25306775-25306783 chr10:25306779-25306786
26	MAX	chr10:25304687-25307095	A549	lung:	n/a	chr10:25305892-25305901 chr10:25305505-25305514 chr10:25305500-25305519 chr10:25305507-25305523 chr10:25305504-25305515 chr10:25305919-25305929
27	IRF1	chr10:25304884-25306763	K562	blood:	n/a	chr10:25305682-25305692 chr10:25305678-25305692 chr10:25305385-25305399 chr10:25305676-25305693 chr10:25305593-25305607 chr10:25306544-25306558
28	POLR2A	chr10:25305306-25306562	GM12891	blood:	n/a	n/a
29	POLR2A	chr10:25305104-25306876	HepG2	liver:	n/a	n/a
30	MYC	chr10:25304831-25306951	K562	blood:	n/a	chr10:25305892-25305901 chr10:25305505-25305514 chr10:25305500-25305519 chr10:25305507-25305523 chr10:25305504-25305515 chr10:25305919-25305929
31	MAZ	chr10:25304494-25306536	IMR90	lung:	n/a	chr10:25305892-25305901 chr10:25305505-25305514 chr10:25305500-25305519 chr10:25305507-25305523 chr10:25305504-25305515 chr10:25305919-25305929
32	POLR2A	chr10:25305004-25307005	K562	blood:	n/a	n/a
33	KAP1	chr10:25306229-25306995	K562	blood:	n/a	n/a
34	POLR2A	chr10:25304958-25306614	H1-hESC	embryonic stem cell:	n/a	n/a
35	POLR2A	chr10:25305372-25306529	K562	blood:	n/a	n/a
36	YY1	chr10:25306067-25306528	GM12878	blood:	n/a	n/a
37	TCF12	chr10:25304701-25306551	A549	lung:	n/a	chr10:25305935-25305945 chr10:25305325-25305335
38	POLR2A	chr10:25305137-25306548	ECC-1	luminal epithelium:	n/a	n/a
39	REST	chr10:25304520-25306779	H1-neurons	neurons:	n/a	chr10:25305961-25305974 chr10:25305390-25305403 chr10:25305383-25305396 chr10:25305926-25305939
40	POLR2A	chr10:25304956-25306589	K562	blood:	n/a	n/a
41	PML	chr10:25304857-25306655	GM12878	blood:	n/a	n/a
42	TBP	chr10:25305121-25306537	GM12878	blood:	n/a	n/a
43	POLR2A	chr10:25304549-25307291	MCF10A-Er-Src	breast:	n/a	n/a
44	POLR2A	chr10:25304938-25306889	K562	blood:	n/a	n/a
45	HEY1	chr10:25305067-25306528	HepG2	liver:	n/a	n/a
46	GATA1	chr10:25305048-25306910	PBDE	blood:	n/a	chr10:25305675-25305685 chr10:25306347-25306357
47	JUN	chr10:25306491-25306760	K562	blood:	n/a	n/a
48	POLR2A	chr10:25305039-25306716	HepG2	liver:	n/a	n/a
49	POLR2A	chr10:25305161-25306548	GM19099	blood:	n/a	n/a
50	POLR2A	chr10:25304949-25306757	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:24926297..24929907-chr10:25304441..25307349,3	MCF-7	breast:
2	chr10:24911061..24913543-chr10:25305498..25307037,2	MCF-7	breast:
3	chr10:25239937..25242303-chr10:25306318..25308090,2	MCF-7	breast:
4	chr10:25010539..25015061-chr10:25304353..25309032,5	K562	blood:
5	chr10:25306123..25307821-chr10:25350955..25353147,2	MCF-7	breast:
6	chr10:25009784..25012218-chr10:25304353..25306747,3	K562	blood:
7	chr10:25008982..25015736-chr10:25303520..25307645,9	MCF-7	breast:
8	chr10:24878368..24880293-chr10:25305161..25308124,2	K562	blood:
9	chr10:25306319..25307953-chr10:25346499..25349389,2	MCF-7	breast:
10	chr10:25305870..25307859-chr10:25312050..25313670,2	K562	blood:
11	chr10:25011203..25013801-chr10:25304621..25307891,5	MCF-7	breast:
12	chr10:25287153..25289677-chr10:25305591..25307248,2	K562	blood:
13	chr10:25239628..25245194-chr10:25304841..25307327,7	K562	blood:
14	chr10:24974642..24976201-chr10:25305799..25307344,2	MCF-7	breast:
15	chr10:25018793..25020691-chr10:25305744..25307257,2	K562	blood:

Variant related genes	Relation type
ENKUR	TF binding region
ENSG00000107863	Chromatin interaction
ENSG00000199535	Chromatin interaction
ENSG00000099256	Chromatin interaction
ENSG00000273107	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1000875	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508685	0.99[ASN][1000 genomes]
rs10508686	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764515	0.85[ASN][1000 genomes]
rs10764516	0.97[ASN][1000 genomes]
rs10764517	0.99[ASN][1000 genomes]
rs10764518	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828740	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828741	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828743	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10828744	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828745	0.99[ASN][1000 genomes]
rs10828747	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11014347	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014348	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014349	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014350	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014351	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11014357	0.99[ASN][1000 genomes]
rs11014360	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014361	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014362	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1124017	0.99[ASN][1000 genomes]
rs11593926	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598879	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249889	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256642	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12356765	0.99[ASN][1000 genomes]
rs12761282	0.81[ASN][1000 genomes]
rs12769388	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12776058	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12781953	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12784769	0.89[ASN][1000 genomes]
rs1352982	0.85[ASN][1000 genomes]
rs1352984	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1352985	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1492608	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1546097	1.00[ASN][1000 genomes]
rs1907791	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2031600	0.80[ASN][1000 genomes]
rs2087782	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2131275	0.82[AMR][1000 genomes]
rs2131276	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2131277	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220707	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2279547	0.88[ASN][1000 genomes]
rs2291583	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2291584	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2291585	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2291586	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2307047	0.81[ASN][1000 genomes]
rs2367506	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs274290	0.80[ASN][1000 genomes]
rs4345864	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4747509	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747511	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4748993	0.92[ASN][1000 genomes]
rs4748994	0.89[ASN][1000 genomes]
rs4748996	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748997	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748998	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748999	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4749000	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4749001	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56192563	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60251099	0.84[ASN][1000 genomes]
rs6482467	0.96[ASN][1000 genomes]
rs6482468	0.85[ASN][1000 genomes]
rs7082131	0.98[ASN][1000 genomes]
rs7086282	0.99[ASN][1000 genomes]
rs7095364	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7393543	0.99[ASN][1000 genomes]
rs7913853	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs902903	0.81[ASN][1000 genomes]
rs902904	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs902905	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs950609	0.99[ASN][1000 genomes]
rs987274	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418576	chr10:25295995-25311122	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25303200-25306600	Active TSS	Brain Anterior Caudate	brain
2	chr10:25303800-25306600	Active TSS	Brain Cingulate Gyrus	brain
3	chr10:25303800-25306600	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr10:25304000-25307000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:25304200-25306600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:25304400-25306600	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr10:25304600-25306600	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr10:25304600-25306600	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr10:25304600-25306600	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr10:25304600-25306600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:25304600-25306600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:25304600-25306600	Active TSS	Fetal Kidney	kidney
13	chr10:25304600-25306600	Active TSS	Fetal Muscle Trunk	muscle
14	chr10:25304600-25306600	Active TSS	Fetal Stomach	stomach
15	chr10:25304600-25306600	Active TSS	Right Atrium	heart
16	chr10:25304600-25306600	Active TSS	Right Ventricle	heart
17	chr10:25304600-25306600	Active TSS	Stomach Smooth Muscle	stomach
18	chr10:25304600-25306600	Active TSS	HSMMtube	muscle
19	chr10:25304600-25306800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:25304600-25306800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:25304600-25306800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:25304600-25306800	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr10:25304600-25306800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:25304600-25306800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:25304600-25307000	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr10:25304600-25307000	Active TSS	A549	lung
27	chr10:25304600-25307400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:25304800-25306600	Active TSS	H1 Cell Line	embryonic stem cell
29	chr10:25304800-25306600	Active TSS	H9 Cell Line	embryonic stem cell
30	chr10:25304800-25306600	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr10:25304800-25306600	Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr10:25304800-25306600	Active TSS	Primary T killer memory cells from peripheral blood	blood
33	chr10:25304800-25306600	Active TSS	Aorta	Aorta
34	chr10:25304800-25306600	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr10:25304800-25306600	Active TSS	Pancreas	Pancrea
36	chr10:25304800-25306600	Active TSS	Placenta Amnion	Placenta Amnion
37	chr10:25304800-25306600	Active TSS	Psoas Muscle	Psoas
38	chr10:25304800-25306600	Active TSS	Thymus	Thymus
39	chr10:25304800-25306600	Active TSS	HSMM	muscle
40	chr10:25304800-25306800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
41	chr10:25304800-25306800	Active TSS	Fetal Brain Female	brain
42	chr10:25304800-25307000	Active TSS	iPS-15b Cell Line	embryonic stem cell
43	chr10:25305000-25306600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:25305000-25306600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
45	chr10:25305000-25306600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:25305000-25306600	Active TSS	Fetal Intestine Small	intestine
47	chr10:25305000-25306600	Active TSS	Fetal Lung	lung
48	chr10:25305000-25306600	Active TSS	NHDF-Ad	bronchial
49	chr10:25305000-25306800	Active TSS	HMEC	breast
50	chr10:25305000-25307000	Active TSS	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links