Variant report

Variant	rs6482468
Chromosome Location	chr10:25334906-25334907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25305526..25307030-chr10:25332237..25335225,2	MCF-7	breast:
2	chr10:25334592..25336921-chr10:25350299..25353033,2	K562	blood:

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1000875	0.88[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs10508685	0.81[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs10508686	0.87[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs10764515	0.88[CEU][hapmap];0.83[CHB][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes]
rs10764516	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10764517	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10764518	0.88[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs10764519	0.84[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap]
rs10828740	0.85[ASN][1000 genomes]
rs10828741	0.91[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs10828744	0.85[ASN][1000 genomes]
rs10828745	0.81[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs10828747	0.98[ASN][1000 genomes]
rs10828750	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10828751	0.96[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10828752	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10828754	0.88[EUR][1000 genomes]
rs11014347	0.85[ASN][1000 genomes]
rs11014348	0.85[ASN][1000 genomes]
rs11014349	0.85[ASN][1000 genomes]
rs11014350	0.84[ASN][1000 genomes]
rs11014351	0.82[ASN][1000 genomes]
rs11014357	0.84[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11014360	0.86[ASN][1000 genomes]
rs11014361	0.95[ASN][1000 genomes]
rs11014362	0.98[ASN][1000 genomes]
rs11014365	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11014367	0.85[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1124017	0.86[ASN][1000 genomes]
rs11593926	0.85[ASN][1000 genomes]
rs11598879	0.85[ASN][1000 genomes]
rs12219239	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs12241661	0.88[ASN][1000 genomes]
rs12243641	0.81[ASN][1000 genomes]
rs12249889	0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs12256642	0.87[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs12356765	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12776058	0.85[ASN][1000 genomes]
rs12784769	0.84[CHB][hapmap]
rs1352982	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1352984	0.84[ASN][1000 genomes]
rs1352985	0.86[ASN][1000 genomes]
rs1492608	0.87[CHB][hapmap];0.84[ASN][1000 genomes]
rs1546097	0.80[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs185669	0.84[CEU][hapmap]
rs1907790	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1907791	0.99[ASN][1000 genomes]
rs1963584	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2087781	0.81[CEU][hapmap]
rs2087782	0.85[ASN][1000 genomes]
rs2131275	0.88[ASN][1000 genomes]
rs2131276	0.88[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs2131277	0.85[ASN][1000 genomes]
rs2220707	0.99[ASN][1000 genomes]
rs2279547	0.89[CEU][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes]
rs2291583	0.83[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs2291584	0.84[ASN][1000 genomes]
rs2291585	0.84[ASN][1000 genomes]
rs2291586	0.85[ASN][1000 genomes]
rs2367506	0.85[ASN][1000 genomes]
rs2367507	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs274301	0.81[CEU][hapmap];0.84[CHB][hapmap]
rs274304	0.85[CEU][hapmap]
rs274305	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs274307	0.81[EUR][1000 genomes]
rs274311	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs274313	0.81[CEU][hapmap]
rs274316	0.89[CEU][hapmap]
rs4237369	0.88[ASN][1000 genomes]
rs4345864	0.88[CHB][hapmap]
rs4508094	0.87[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs4747509	0.85[ASN][1000 genomes]
rs4747510	0.85[ASN][1000 genomes]
rs4747511	0.86[ASN][1000 genomes]
rs4748993	0.84[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.84[YRI][hapmap]
rs4748996	0.87[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs4748997	0.85[ASN][1000 genomes]
rs4748998	0.85[ASN][1000 genomes]
rs4748999	0.86[ASN][1000 genomes]
rs4749000	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4749001	0.98[ASN][1000 genomes]
rs56192563	0.84[ASN][1000 genomes]
rs6482467	0.88[CHB][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7082131	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7086282	0.84[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7095364	0.85[ASN][1000 genomes]
rs7393543	0.84[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7896122	0.88[ASN][1000 genomes]
rs7898431	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7911863	0.88[ASN][1000 genomes]
rs7913853	0.88[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs902904	0.87[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs902905	0.88[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs902906	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs950609	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs987274	0.84[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.84[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25326600-25336200	Weak transcription	Fetal Intestine Small	intestine

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