Variant report

No.	Distal block	Cell Line	Cell type
1	chr10:25241659..25243537-chr10:25257631..25261470,3	K562	blood:
2	chr10:25253127..25256241-chr10:25256724..25259023,3	K562	blood:
3	chr10:25253735..25256241-chr10:25257009..25259023,2	K562	blood:

Variant related genes	Relation type
ENSG00000273107	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10764515	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12761282	0.92[ASN][1000 genomes]
rs12784769	0.85[ASN][1000 genomes]
rs166670	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2031600	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2279547	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs274288	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs274289	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs274290	0.91[ASN][1000 genomes]
rs274291	0.86[ASN][1000 genomes]
rs274292	0.86[ASN][1000 genomes]
rs274293	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs274294	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs274301	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs274305	0.85[ASN][1000 genomes]
rs274307	0.86[ASN][1000 genomes]
rs274310	0.86[ASN][1000 genomes]
rs274311	0.87[ASN][1000 genomes]
rs274313	0.86[ASN][1000 genomes]
rs274316	0.80[ASN][1000 genomes]
rs4345864	0.81[ASN][1000 genomes]
rs4556443	0.89[EUR][1000 genomes]
rs612482	0.87[ASN][1000 genomes]
rs6482467	0.81[ASN][1000 genomes]
rs7082131	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3377854	chr10:25254646-25258844	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25249200-25258600	Weak transcription	Brain Anterior Caudate	brain
2	chr10:25249200-25258600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:25249200-25262200	Weak transcription	Fetal Stomach	stomach
4	chr10:25249200-25263800	Weak transcription	Ovary	ovary
5	chr10:25249400-25258200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:25251000-25263800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:25253200-25262000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:25253200-25264000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:25256400-25264400	Weak transcription	Gastric	stomach
10	chr10:25256800-25258200	Weak transcription	NHDF-Ad	bronchial
11	chr10:25257000-25259000	Weak transcription	Fetal Kidney	kidney
12	chr10:25257600-25258600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:25257800-25258200	Enhancers	Fetal Muscle Trunk	muscle
14	chr10:25257800-25259600	Enhancers	Fetal Muscle Leg	muscle

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