Variant report

Variant	rs274289
Chromosome Location	chr10:25252205-25252206
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25245492..25247955-chr10:25250126..25255906,6	K562	blood:
2	chr10:25247331..25249191-chr10:25250892..25252759,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10764515	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12761282	0.96[ASN][1000 genomes]
rs12784769	0.85[ASN][1000 genomes]
rs166670	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2031600	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2279547	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2478091	0.82[ASN][1000 genomes]
rs274288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs274290	0.91[ASN][1000 genomes]
rs274291	0.86[ASN][1000 genomes]
rs274292	0.86[ASN][1000 genomes]
rs274293	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs274294	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs274301	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs274303	0.81[ASN][1000 genomes]
rs274304	0.81[ASN][1000 genomes]
rs274305	0.89[ASN][1000 genomes]
rs274306	0.81[ASN][1000 genomes]
rs274307	0.90[ASN][1000 genomes]
rs274308	0.81[ASN][1000 genomes]
rs274309	0.81[ASN][1000 genomes]
rs274310	0.90[ASN][1000 genomes]
rs274311	0.90[ASN][1000 genomes]
rs274312	0.81[ASN][1000 genomes]
rs274313	0.90[ASN][1000 genomes]
rs274316	0.84[ASN][1000 genomes]
rs2818289	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4345864	0.81[ASN][1000 genomes]
rs4556443	0.88[EUR][1000 genomes]
rs612482	0.88[ASN][1000 genomes]
rs6482467	0.81[ASN][1000 genomes]
rs7082131	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25242400-25252800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:25248200-25253800	Weak transcription	Right Atrium	heart
3	chr10:25248400-25256600	Weak transcription	Fetal Brain Male	brain
4	chr10:25248400-25256600	Weak transcription	Fetal Kidney	kidney
5	chr10:25249200-25252600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:25249200-25252800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:25249200-25258600	Weak transcription	Brain Anterior Caudate	brain
8	chr10:25249200-25258600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:25249200-25262200	Weak transcription	Fetal Stomach	stomach
10	chr10:25249200-25263800	Weak transcription	Ovary	ovary
11	chr10:25249400-25258200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:25249800-25253000	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:25250600-25252400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr10:25250600-25253200	Enhancers	HMEC	breast
15	chr10:25251000-25263800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:25251400-25253000	Enhancers	Liver	Liver
17	chr10:25251400-25253000	Enhancers	Fetal Intestine Small	intestine
18	chr10:25251400-25253200	Enhancers	Fetal Intestine Large	intestine
19	chr10:25251600-25252400	Enhancers	NH-A	brain
20	chr10:25251600-25253000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:25251600-25253000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr10:25251600-25253000	Enhancers	A549	lung
23	chr10:25251600-25253000	Enhancers	Hela-S3	cervix
24	chr10:25251600-25253000	Enhancers	HepG2	liver
25	chr10:25251600-25253000	Enhancers	NHEK	skin
26	chr10:25251600-25253200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:25251800-25254200	Enhancers	K562	blood
28	chr10:25252000-25252400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:25252000-25252400	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr10:25252000-25252400	Weak transcription	Stomach Mucosa	stomach

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