Variant report

Variant	rs1492606
Chromosome Location	chr10:25368373-25368374
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25304800..25307444-chr10:25366624..25371121,4	MCF-7	breast:
2	chr10:25303695..25307800-chr10:25367762..25370827,4	K562	blood:
3	chr10:25304278..25309002-chr10:25368191..25372754,5	K562	blood:

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction
ENSG00000151023	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10828750	0.80[ASN][1000 genomes]
rs10828751	0.82[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs10828752	0.85[ASN][1000 genomes]
rs10828754	0.81[ASN][1000 genomes]
rs10828755	0.84[ASN][1000 genomes]
rs11014365	0.82[CEU][hapmap]
rs11014367	0.82[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs11014375	0.86[ASN][1000 genomes]
rs11014379	0.85[ASN][1000 genomes]
rs11014389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12219239	0.81[JPT][hapmap]
rs12414202	0.82[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs12764623	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12773782	0.84[ASN][1000 genomes]
rs1492607	0.84[ASN][1000 genomes]
rs1552770	0.85[ASN][1000 genomes]
rs1552771	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2087781	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4508094	0.83[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs4749004	0.84[ASN][1000 genomes]
rs4749005	0.83[ASN][1000 genomes]
rs902906	0.82[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs923757	0.87[ASN][1000 genomes]
rs923758	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25365400-25370400	Enhancers	Fetal Intestine Large	intestine
2	chr10:25365400-25370400	Enhancers	Fetal Intestine Small	intestine
3	chr10:25366000-25369800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:25366000-25371200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:25366200-25369800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:25366200-25369800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:25366800-25369600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:25367400-25368400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:25367400-25368400	Flanking Active TSS	HepG2	liver
10	chr10:25367400-25368400	Enhancers	Osteobl	bone
11	chr10:25367400-25370000	Enhancers	K562	blood
12	chr10:25367600-25368400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:25367600-25368400	Enhancers	Gastric	stomach
14	chr10:25367600-25368400	Enhancers	Pancreas	Pancrea
15	chr10:25367600-25368600	Flanking Active TSS	A549	lung
16	chr10:25367600-25368800	Enhancers	Stomach Mucosa	stomach
17	chr10:25367600-25374200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:25367800-25368600	Enhancers	Liver	Liver
19	chr10:25368000-25368400	Active TSS	Rectal Mucosa Donor 29	rectum
20	chr10:25368000-25368400	Enhancers	GM12878-XiMat	blood
21	chr10:25368200-25368400	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr10:25368200-25368400	Enhancers	Left Ventricle	heart
23	chr10:25368200-25368400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
24	chr10:25368200-25368400	Enhancers	Small Intestine	intestine
25	chr10:25368200-25368800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:25368200-25369600	Weak transcription	Brain Substantia Nigra	brain

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