Variant report

Variant	rs12251969
Chromosome Location	chr10:25335854-25335855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25304583..25307026-chr10:25335686..25338076,2	MCF-7	breast:
2	chr10:25334592..25336921-chr10:25350299..25353033,2	K562	blood:

Variant related genes	Relation type
ENSG00000151023	Chromatin interaction
ENSG00000185875	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10508681	1.00[EUR][1000 genomes]
rs10828746	0.84[AFR][1000 genomes]
rs11014322	1.00[EUR][1000 genomes]
rs11014406	1.00[EUR][1000 genomes]
rs12245315	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12246243	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12247487	1.00[EUR][1000 genomes]
rs12247642	0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12249087	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12250135	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12260419	1.00[EUR][1000 genomes]
rs12260489	1.00[EUR][1000 genomes]
rs12261956	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12265350	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925091	1.00[EUR][1000 genomes]
rs16925092	1.00[EUR][1000 genomes]
rs16925216	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925349	1.00[EUR][1000 genomes]
rs16925389	1.00[EUR][1000 genomes]
rs16925393	1.00[EUR][1000 genomes]
rs1873737	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1926053	1.00[EUR][1000 genomes]
rs2104488	1.00[EUR][1000 genomes]
rs2307047	0.92[YRI][hapmap]
rs28475481	1.00[EUR][1000 genomes]
rs4330994	1.00[EUR][1000 genomes]
rs4508094	0.82[YRI][hapmap]
rs56291772	1.00[EUR][1000 genomes]
rs56928079	1.00[EUR][1000 genomes]
rs57480457	1.00[EUR][1000 genomes]
rs57542069	1.00[EUR][1000 genomes]
rs7086600	1.00[MEX][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7097598	1.00[EUR][1000 genomes]
rs73606579	1.00[EUR][1000 genomes]
rs74123298	1.00[EUR][1000 genomes]
rs74123299	1.00[EUR][1000 genomes]
rs74123300	1.00[EUR][1000 genomes]
rs7894458	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7910635	0.89[ASW][hapmap]
rs7916898	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs902906	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25326600-25336200	Weak transcription	Fetal Intestine Small	intestine
2	chr10:25335400-25337000	Enhancers	K562	blood
3	chr10:25335600-25336000	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr10:25335600-25336400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:25335600-25336400	Enhancers	Fetal Brain Female	brain
6	chr10:25335600-25337200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:25335600-25338000	Enhancers	Cortex derived primary cultured neurospheres	brain

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