Variant report

Variant	rs7086600
Chromosome Location	chr10:25247289-25247290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:25011850..25014500-chr10:25246674..25248679,2	MCF-7	breast:
2	chr10:25245687..25248875-chr10:25261943..25265245,3	MCF-7	breast:
3	chr10:25245793..25250014-chr10:25304011..25307329,4	MCF-7	breast:
4	chr10:25245492..25247572-chr10:25252879..25256306,3	K562	blood:
5	chr10:25011700..25014356-chr10:25245305..25247951,2	K562	blood:
6	chr10:25242420..25244557-chr10:25246178..25248429,2	MCF-7	breast:
7	chr10:25245492..25247955-chr10:25250126..25255906,6	K562	blood:
8	chr10:25183976..25186724-chr10:25246241..25248282,2	K562	blood:
9	chr10:25246877..25249016-chr10:25275912..25277898,2	K562	blood:
10	chr10:25246322..25248329-chr10:25271601..25273321,2	K562	blood:
11	chr10:25242028..25244551-chr10:25245660..25248271,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000151023	Chromatin interaction
ENSG00000185875	Chromatin interaction
ENSG00000273107	Chromatin interaction
ENSG00000107863	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10508681	1.00[EUR][1000 genomes]
rs11014322	1.00[EUR][1000 genomes]
rs11014406	1.00[EUR][1000 genomes]
rs12245315	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12246243	1.00[EUR][1000 genomes]
rs12247487	1.00[EUR][1000 genomes]
rs12247642	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12249087	1.00[EUR][1000 genomes]
rs12250135	1.00[EUR][1000 genomes]
rs12251969	1.00[MEX][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12260419	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12260489	1.00[EUR][1000 genomes]
rs12261956	1.00[EUR][1000 genomes]
rs12265350	1.00[EUR][1000 genomes]
rs16925091	1.00[EUR][1000 genomes]
rs16925092	1.00[EUR][1000 genomes]
rs16925216	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925349	1.00[EUR][1000 genomes]
rs16925389	1.00[EUR][1000 genomes]
rs16925393	1.00[EUR][1000 genomes]
rs1873737	1.00[EUR][1000 genomes]
rs1926053	1.00[EUR][1000 genomes]
rs2104488	1.00[EUR][1000 genomes]
rs28475481	1.00[EUR][1000 genomes]
rs4330994	1.00[EUR][1000 genomes]
rs56291772	1.00[EUR][1000 genomes]
rs56928079	1.00[EUR][1000 genomes]
rs57480457	1.00[EUR][1000 genomes]
rs57542069	1.00[EUR][1000 genomes]
rs7097598	1.00[EUR][1000 genomes]
rs73606579	1.00[EUR][1000 genomes]
rs74123298	1.00[EUR][1000 genomes]
rs74123299	1.00[EUR][1000 genomes]
rs74123300	1.00[EUR][1000 genomes]
rs7894458	1.00[EUR][1000 genomes]
rs7916898	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25242200-25247800	Weak transcription	Aorta	Aorta
2	chr10:25242200-25247800	Weak transcription	Left Ventricle	heart
3	chr10:25242200-25248000	Weak transcription	Psoas Muscle	Psoas
4	chr10:25242400-25247400	Weak transcription	Ovary	ovary
5	chr10:25242400-25251400	Weak transcription	Liver	Liver
6	chr10:25242400-25252800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:25242600-25247400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:25242600-25247600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:25242600-25249000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:25242800-25247400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:25242800-25247600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:25242800-25247800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:25242800-25247800	Weak transcription	Right Atrium	heart
14	chr10:25242800-25251400	Weak transcription	Fetal Intestine Large	intestine
15	chr10:25242800-25251600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr10:25243000-25247600	Weak transcription	Fetal Brain Male	brain
17	chr10:25243000-25251400	Weak transcription	Fetal Intestine Small	intestine
18	chr10:25243200-25247600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr10:25243200-25247600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr10:25243200-25247600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:25245600-25248400	Enhancers	HMEC	breast
22	chr10:25245600-25248600	Enhancers	Hela-S3	cervix
23	chr10:25245800-25247400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:25245800-25247400	Enhancers	NHLF	lung
25	chr10:25245800-25248400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:25245800-25248600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr10:25246000-25247400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:25246000-25247800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:25246000-25247800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:25246200-25247400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:25246200-25247400	Enhancers	NHDF-Ad	bronchial
32	chr10:25246200-25247600	Weak transcription	Brain Substantia Nigra	brain
33	chr10:25246400-25247400	Enhancers	Brain Germinal Matrix	brain
34	chr10:25246400-25247400	Enhancers	HSMMtube	muscle
35	chr10:25246400-25248400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr10:25246400-25248600	Enhancers	Fetal Stomach	stomach
37	chr10:25246400-25248600	Enhancers	HSMM	muscle
38	chr10:25246600-25247400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:25246600-25247800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr10:25246600-25248200	Enhancers	NHEK	skin
41	chr10:25246800-25247400	Enhancers	HUVEC	blood vessel
42	chr10:25246800-25247400	Enhancers	K562	blood
43	chr10:25246800-25247600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:25246800-25247600	Enhancers	Adipose Nuclei	Adipose
45	chr10:25246800-25247600	Enhancers	Colon Smooth Muscle	Colon
46	chr10:25246800-25247600	Flanking Active TSS	A549	lung
47	chr10:25246800-25248000	Enhancers	Placenta Amnion	Placenta Amnion
48	chr10:25246800-25248200	Active TSS	Brain Inferior Temporal Lobe	brain
49	chr10:25247000-25247400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:25247000-25247400	Enhancers	Muscle Satellite Cultured Cells	--

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