Variant report

Variant	rs2104488
Chromosome Location	chr10:25148141-25148142
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25142855..25145559-chr10:25145835..25149874,3	K562	blood:
2	chr10:25146602..25148894-chr10:25247963..25249557,2	K562	blood:
3	chr10:25141310..25145437-chr10:25147215..25151269,4	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11014322	1.00[EUR][1000 genomes]
rs12245315	1.00[EUR][1000 genomes]
rs12246243	1.00[EUR][1000 genomes]
rs12247642	1.00[EUR][1000 genomes]
rs12250135	1.00[EUR][1000 genomes]
rs12251969	1.00[EUR][1000 genomes]
rs12260419	1.00[EUR][1000 genomes]
rs12265350	1.00[EUR][1000 genomes]
rs16925091	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925092	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925216	1.00[EUR][1000 genomes]
rs1873737	1.00[EUR][1000 genomes]
rs56291772	1.00[EUR][1000 genomes]
rs56928079	1.00[EUR][1000 genomes]
rs7086600	1.00[EUR][1000 genomes]
rs73606579	1.00[EUR][1000 genomes]
rs7916898	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25137600-25158400	Weak transcription	Ovary	ovary
2	chr10:25139200-25152000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:25139200-25152600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:25139800-25155800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:25145400-25148400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:25145600-25148600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:25145800-25148200	Enhancers	Fetal Heart	heart
8	chr10:25146200-25148200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr10:25146200-25148200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr10:25146200-25148200	Enhancers	Hela-S3	cervix
11	chr10:25146200-25148200	Enhancers	HUVEC	blood vessel
12	chr10:25146200-25148400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr10:25146400-25148200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:25146400-25148200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr10:25146400-25148200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:25146400-25148200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:25146400-25148200	Enhancers	HMEC	breast
18	chr10:25146400-25148200	Enhancers	NH-A	brain
19	chr10:25146400-25148200	Enhancers	NHEK	skin
20	chr10:25146400-25148400	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr10:25146600-25148200	Enhancers	Brain Germinal Matrix	brain
22	chr10:25146600-25154200	Weak transcription	Brain Hippocampus Middle	brain
23	chr10:25146800-25148200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:25146800-25148200	Enhancers	NHDF-Ad	bronchial
25	chr10:25146800-25154000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr10:25146800-25155600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr10:25147000-25148200	Enhancers	HSMM	muscle
28	chr10:25147000-25148200	Enhancers	NHLF	lung
29	chr10:25147000-25148200	Enhancers	Osteobl	bone
30	chr10:25147200-25148200	Enhancers	H9 Cell Line	embryonic stem cell
31	chr10:25147200-25148200	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr10:25147200-25148400	Enhancers	Placenta	Placenta
33	chr10:25147400-25148200	Enhancers	H1 Cell Line	embryonic stem cell
34	chr10:25147400-25148200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr10:25147400-25148400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:25147400-25148600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:25147400-25156000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:25147600-25148200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:25147600-25148200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:25147600-25148200	Enhancers	Left Ventricle	heart
41	chr10:25147600-25148400	Enhancers	Fetal Muscle Leg	muscle
42	chr10:25147600-25148400	Enhancers	K562	blood
43	chr10:25147800-25148800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr10:25147800-25152000	Weak transcription	Fetal Lung	lung
45	chr10:25147800-25153400	Weak transcription	Brain Angular Gyrus	brain
46	chr10:25148000-25148200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr10:25148000-25148600	Enhancers	Muscle Satellite Cultured Cells	--
48	chr10:25148000-25152000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:25148000-25152000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr10:25148000-25152000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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