Variant report

Variant	rs16925092
Chromosome Location	chr10:25149349-25149350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25142855..25145559-chr10:25145835..25149874,3	K562	blood:
2	chr10:25141310..25145437-chr10:25147215..25151269,4	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11014322	1.00[EUR][1000 genomes]
rs12245315	1.00[EUR][1000 genomes]
rs12246243	1.00[EUR][1000 genomes]
rs12247642	1.00[EUR][1000 genomes]
rs12250135	1.00[EUR][1000 genomes]
rs12251969	1.00[EUR][1000 genomes]
rs12260419	1.00[EUR][1000 genomes]
rs12265350	1.00[EUR][1000 genomes]
rs16925091	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925216	1.00[EUR][1000 genomes]
rs1873737	1.00[EUR][1000 genomes]
rs2104488	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56291772	1.00[EUR][1000 genomes]
rs56928079	1.00[EUR][1000 genomes]
rs7086600	1.00[EUR][1000 genomes]
rs73606579	1.00[EUR][1000 genomes]
rs7916898	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25137600-25158400	Weak transcription	Ovary	ovary
2	chr10:25139200-25152000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:25139200-25152600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:25139800-25155800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:25146600-25154200	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:25146800-25154000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:25146800-25155600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:25147400-25156000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:25147800-25152000	Weak transcription	Fetal Lung	lung
10	chr10:25147800-25153400	Weak transcription	Brain Angular Gyrus	brain
11	chr10:25148000-25152000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:25148000-25152000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:25148000-25152000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:25148000-25154200	Weak transcription	A549	lung
15	chr10:25148000-25155000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:25148200-25153400	Weak transcription	HMEC	breast
17	chr10:25148200-25153400	Weak transcription	NHEK	skin
18	chr10:25148200-25153400	Weak transcription	NHLF	lung
19	chr10:25148200-25154400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr10:25148200-25155200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:25148200-25158400	Weak transcription	HSMM	muscle
22	chr10:25148400-25152400	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:25148400-25154200	Weak transcription	K562	blood
24	chr10:25148400-25155000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:25148600-25154200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr10:25148600-25154200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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