Variant report

Variant	rs56291772
Chromosome Location	chr10:25164545-25164546
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25156571..25158685-chr10:25163597..25166059,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228667	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11014322	1.00[EUR][1000 genomes]
rs12245315	1.00[EUR][1000 genomes]
rs12246243	1.00[EUR][1000 genomes]
rs12247642	1.00[EUR][1000 genomes]
rs12250135	1.00[EUR][1000 genomes]
rs12251969	1.00[EUR][1000 genomes]
rs12260419	1.00[EUR][1000 genomes]
rs12261956	1.00[EUR][1000 genomes]
rs12265350	1.00[EUR][1000 genomes]
rs16925091	1.00[EUR][1000 genomes]
rs16925092	1.00[EUR][1000 genomes]
rs16925216	1.00[EUR][1000 genomes]
rs1873737	1.00[EUR][1000 genomes]
rs2104488	1.00[EUR][1000 genomes]
rs55985845	0.95[AFR][1000 genomes]
rs56928079	1.00[EUR][1000 genomes]
rs7086600	1.00[EUR][1000 genomes]
rs73606579	1.00[EUR][1000 genomes]
rs7894458	1.00[EUR][1000 genomes]
rs7916898	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25156600-25167400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr10:25158800-25179600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:25159000-25168800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:25161200-25175200	Weak transcription	Stomach Mucosa	stomach
5	chr10:25161400-25167400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:25162600-25167200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:25162600-25167600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:25162600-25172800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:25162800-25168800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr10:25162800-25172200	Weak transcription	Brain Angular Gyrus	brain
11	chr10:25162800-25173400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:25162800-25173600	Weak transcription	HSMMtube	muscle
13	chr10:25162800-25174600	Weak transcription	Fetal Lung	lung
14	chr10:25163000-25171000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:25163000-25173200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:25163200-25167200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:25164200-25164800	Weak transcription	Brain Anterior Caudate	brain
18	chr10:25164200-25167800	Weak transcription	Brain Hippocampus Middle	brain
19	chr10:25164200-25172200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:25164400-25167200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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