Variant report
| Variant | rs12250135 |
|---|---|
| Chromosome Location | chr10:25293627-25293628 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10508681 | 1.00[EUR][1000 genomes] |
| rs11014322 | 1.00[EUR][1000 genomes] |
| rs11014406 | 1.00[EUR][1000 genomes] |
| rs12245315 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12246243 | 0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12247487 | 1.00[EUR][1000 genomes] |
| rs12247642 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12249087 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12251969 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12260419 | 1.00[EUR][1000 genomes] |
| rs12260489 | 1.00[EUR][1000 genomes] |
| rs12261956 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12265350 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16925091 | 1.00[EUR][1000 genomes] |
| rs16925092 | 1.00[EUR][1000 genomes] |
| rs16925216 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16925349 | 1.00[EUR][1000 genomes] |
| rs16925389 | 1.00[EUR][1000 genomes] |
| rs16925393 | 1.00[EUR][1000 genomes] |
| rs1873737 | 0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1926053 | 1.00[EUR][1000 genomes] |
| rs2104488 | 1.00[EUR][1000 genomes] |
| rs28475481 | 1.00[EUR][1000 genomes] |
| rs4330994 | 1.00[EUR][1000 genomes] |
| rs56291772 | 1.00[EUR][1000 genomes] |
| rs56928079 | 1.00[EUR][1000 genomes] |
| rs57480457 | 1.00[EUR][1000 genomes] |
| rs57542069 | 1.00[EUR][1000 genomes] |
| rs7086600 | 1.00[EUR][1000 genomes] |
| rs7097598 | 1.00[EUR][1000 genomes] |
| rs73606579 | 1.00[EUR][1000 genomes] |
| rs74123298 | 1.00[EUR][1000 genomes] |
| rs74123299 | 1.00[EUR][1000 genomes] |
| rs74123300 | 1.00[EUR][1000 genomes] |
| rs7894458 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7916898 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25292800-25294000 | Weak transcription | Ovary | ovary |
| 2 | chr10:25292800-25294600 | ZNF genes & repeats | Cortex derived primary cultured neurospheres | brain |
