Variant report

Variant	rs74123299
Chromosome Location	chr10:25391435-25391436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25011194..25013594-chr10:25390011..25392696,2	K562	blood:

Variant related genes	Relation type
ENSG00000107863	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10508681	1.00[EUR][1000 genomes]
rs11014322	1.00[EUR][1000 genomes]
rs11014406	1.00[EUR][1000 genomes]
rs12245315	1.00[EUR][1000 genomes]
rs12246243	1.00[EUR][1000 genomes]
rs12247487	1.00[EUR][1000 genomes]
rs12247642	1.00[EUR][1000 genomes]
rs12249087	1.00[EUR][1000 genomes]
rs12250135	1.00[EUR][1000 genomes]
rs12251969	1.00[EUR][1000 genomes]
rs12260419	1.00[EUR][1000 genomes]
rs12260489	1.00[EUR][1000 genomes]
rs12261956	1.00[EUR][1000 genomes]
rs12265350	1.00[EUR][1000 genomes]
rs16925216	1.00[EUR][1000 genomes]
rs16925349	1.00[EUR][1000 genomes]
rs16925389	1.00[EUR][1000 genomes]
rs16925393	1.00[EUR][1000 genomes]
rs1873737	1.00[EUR][1000 genomes]
rs1926053	1.00[EUR][1000 genomes]
rs28475481	1.00[EUR][1000 genomes]
rs4330994	1.00[EUR][1000 genomes]
rs57480457	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57542069	1.00[EUR][1000 genomes]
rs7086600	1.00[EUR][1000 genomes]
rs7097598	1.00[EUR][1000 genomes]
rs74123298	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74123300	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7894458	1.00[EUR][1000 genomes]
rs7916898	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25386000-25393400	Weak transcription	Brain Anterior Caudate	brain
2	chr10:25386000-25393400	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:25386000-25393400	Weak transcription	Brain Substantia Nigra	brain
4	chr10:25388800-25392800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:25388800-25394400	Enhancers	Fetal Brain Male	brain
6	chr10:25388800-25395200	Enhancers	Fetal Brain Female	brain
7	chr10:25389800-25392800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:25389800-25394600	Enhancers	Brain Germinal Matrix	brain
9	chr10:25390200-25393000	Enhancers	K562	blood
10	chr10:25390400-25391600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:25390400-25391800	Enhancers	Fetal Heart	heart
12	chr10:25390400-25392400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:25390600-25391600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:25390600-25393600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:25390600-25394600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:25390600-25395000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr10:25390800-25391600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr10:25390800-25392000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:25390800-25393600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr10:25390800-25393800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr10:25391400-25393600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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