Variant report
| Variant | rs7097598 |
|---|---|
| Chromosome Location | chr10:25415259-25415260 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-GPR158-1 | chr10:25415180-25415427 | ENSG00000231422.2 |
| 2 | lnc-GPR158-1 | chr10:25415180-25415427 | NONHSAT011799 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10508681 | 1.00[EUR][1000 genomes] |
| rs11014322 | 1.00[EUR][1000 genomes] |
| rs11014406 | 1.00[EUR][1000 genomes] |
| rs12245315 | 1.00[EUR][1000 genomes] |
| rs12246243 | 1.00[EUR][1000 genomes] |
| rs12247487 | 1.00[EUR][1000 genomes] |
| rs12247642 | 1.00[EUR][1000 genomes] |
| rs12249087 | 1.00[EUR][1000 genomes] |
| rs12250135 | 1.00[EUR][1000 genomes] |
| rs12251969 | 1.00[EUR][1000 genomes] |
| rs12260419 | 1.00[EUR][1000 genomes] |
| rs12260489 | 1.00[EUR][1000 genomes] |
| rs12261956 | 1.00[EUR][1000 genomes] |
| rs12265350 | 1.00[EUR][1000 genomes] |
| rs16925216 | 1.00[EUR][1000 genomes] |
| rs16925349 | 1.00[EUR][1000 genomes] |
| rs16925389 | 1.00[EUR][1000 genomes] |
| rs16925393 | 1.00[EUR][1000 genomes] |
| rs1873737 | 1.00[EUR][1000 genomes] |
| rs1926053 | 1.00[EUR][1000 genomes] |
| rs28475481 | 1.00[EUR][1000 genomes] |
| rs4330994 | 1.00[EUR][1000 genomes] |
| rs57480457 | 1.00[EUR][1000 genomes] |
| rs57542069 | 1.00[EUR][1000 genomes] |
| rs7086600 | 1.00[EUR][1000 genomes] |
| rs74123298 | 1.00[EUR][1000 genomes] |
| rs74123299 | 1.00[EUR][1000 genomes] |
| rs74123300 | 1.00[EUR][1000 genomes] |
| rs7894458 | 1.00[EUR][1000 genomes] |
| rs7916898 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894970 | chr10:25385858-25522280 | Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv894971 | chr10:25403234-25522280 | Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25414600-25415400 | Enhancers | Cortex derived primary cultured neurospheres | brain |
