Variant report

Variant	rs57542069
Chromosome Location	chr10:25386340-25386341
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10508681	1.00[EUR][1000 genomes]
rs11014322	1.00[EUR][1000 genomes]
rs11014406	1.00[EUR][1000 genomes]
rs12245315	1.00[EUR][1000 genomes]
rs12246243	1.00[EUR][1000 genomes]
rs12247487	1.00[EUR][1000 genomes]
rs12247642	1.00[EUR][1000 genomes]
rs12249087	1.00[EUR][1000 genomes]
rs12250135	1.00[EUR][1000 genomes]
rs12251969	1.00[EUR][1000 genomes]
rs12260419	1.00[EUR][1000 genomes]
rs12260489	1.00[EUR][1000 genomes]
rs12261956	1.00[EUR][1000 genomes]
rs12265350	1.00[EUR][1000 genomes]
rs16925216	1.00[EUR][1000 genomes]
rs16925349	1.00[EUR][1000 genomes]
rs16925389	1.00[EUR][1000 genomes]
rs16925393	1.00[EUR][1000 genomes]
rs1873737	1.00[EUR][1000 genomes]
rs1926053	1.00[EUR][1000 genomes]
rs28475481	1.00[EUR][1000 genomes]
rs4330994	1.00[EUR][1000 genomes]
rs57480457	1.00[EUR][1000 genomes]
rs7086600	1.00[EUR][1000 genomes]
rs7097598	1.00[EUR][1000 genomes]
rs74123298	1.00[EUR][1000 genomes]
rs74123299	1.00[EUR][1000 genomes]
rs74123300	1.00[EUR][1000 genomes]
rs7894458	1.00[EUR][1000 genomes]
rs7916898	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3328369	chr10:25386066-25386658	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25385000-25386800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:25385200-25386600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:25385400-25386400	Enhancers	Brain Cingulate Gyrus	brain
4	chr10:25386000-25389800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:25386000-25390400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:25386000-25393400	Weak transcription	Brain Anterior Caudate	brain
7	chr10:25386000-25393400	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:25386000-25393400	Weak transcription	Brain Substantia Nigra	brain
9	chr10:25386200-25386400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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