Variant report

No.	Distal block	Cell Line	Cell type
1	chr10:25011013..25013160-chr10:25345003..25347658,2	K562	blood:
2	chr10:25345062..25348953-chr10:25349936..25353027,4	K562	blood:
3	chr10:25344134..25348116-chr10:25349607..25352644,3	MCF-7	breast:
4	chr10:25306319..25307953-chr10:25346499..25349389,2	MCF-7	breast:
5	chr10:25343371..25346299-chr10:25346762..25349074,2	K562	blood:

Variant related genes	Relation type
ENSG00000107863	Chromatin interaction

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10508681	1.00[EUR][1000 genomes]
rs10828746	0.84[AFR][1000 genomes]
rs11014322	1.00[EUR][1000 genomes]
rs11014406	1.00[EUR][1000 genomes]
rs12245315	1.00[EUR][1000 genomes]
rs12246243	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12247487	1.00[EUR][1000 genomes]
rs12247642	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12249087	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12250135	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12251969	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12260419	1.00[EUR][1000 genomes]
rs12260489	1.00[EUR][1000 genomes]
rs12261956	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12265350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925216	1.00[EUR][1000 genomes]
rs16925349	1.00[EUR][1000 genomes]
rs16925389	1.00[EUR][1000 genomes]
rs16925393	1.00[EUR][1000 genomes]
rs1873737	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1926053	1.00[EUR][1000 genomes]
rs28475481	1.00[EUR][1000 genomes]
rs4330994	1.00[EUR][1000 genomes]
rs56291772	1.00[EUR][1000 genomes]
rs56928079	1.00[EUR][1000 genomes]
rs57480457	1.00[EUR][1000 genomes]
rs57542069	1.00[EUR][1000 genomes]
rs7086600	1.00[EUR][1000 genomes]
rs7097598	1.00[EUR][1000 genomes]
rs74123298	1.00[EUR][1000 genomes]
rs74123299	1.00[EUR][1000 genomes]
rs74123300	1.00[EUR][1000 genomes]
rs7916898	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25337400-25348200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:25337600-25348200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:25338200-25348400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:25345200-25349400	Enhancers	Fetal Intestine Small	intestine
5	chr10:25345600-25350600	Enhancers	Fetal Intestine Large	intestine
6	chr10:25345800-25347200	Enhancers	Liver	Liver
7	chr10:25346000-25347200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:25346000-25349200	Enhancers	K562	blood
9	chr10:25346400-25347400	Enhancers	Stomach Mucosa	stomach
10	chr10:25346400-25347400	Enhancers	HUVEC	blood vessel

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