Variant report

Variant	rs73606579
Chromosome Location	chr10:25143013-25143014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25142855..25145559-chr10:25145835..25149874,3	K562	blood:
2	chr10:25141310..25145437-chr10:25147215..25151269,4	K562	blood:
3	chr10:25139300..25141125-chr10:25142332..25144170,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11014322	1.00[EUR][1000 genomes]
rs12245315	1.00[EUR][1000 genomes]
rs12246243	1.00[EUR][1000 genomes]
rs12247642	1.00[EUR][1000 genomes]
rs12250135	1.00[EUR][1000 genomes]
rs12251969	1.00[EUR][1000 genomes]
rs12260419	1.00[EUR][1000 genomes]
rs16925091	1.00[EUR][1000 genomes]
rs16925092	1.00[EUR][1000 genomes]
rs16925216	1.00[EUR][1000 genomes]
rs1873737	1.00[EUR][1000 genomes]
rs2104488	1.00[EUR][1000 genomes]
rs56291772	1.00[EUR][1000 genomes]
rs56928079	1.00[EUR][1000 genomes]
rs7086600	1.00[EUR][1000 genomes]
rs7916898	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25136400-25147600	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:25136800-25145800	Weak transcription	Fetal Heart	heart
3	chr10:25137400-25147000	Weak transcription	NHLF	lung
4	chr10:25137600-25158400	Weak transcription	Ovary	ovary
5	chr10:25138200-25147000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:25139000-25147600	Weak transcription	K562	blood
7	chr10:25139200-25145600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:25139200-25152000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:25139200-25152600	Weak transcription	Fetal Intestine Small	intestine
10	chr10:25139800-25146400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:25139800-25155800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:25140000-25147400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:25140600-25146200	Weak transcription	Hela-S3	cervix
14	chr10:25140800-25146000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr10:25140800-25146200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:25140800-25147600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:25141000-25143400	Weak transcription	Fetal Lung	lung
18	chr10:25141000-25145400	Weak transcription	Brain Anterior Caudate	brain
19	chr10:25141000-25145400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:25141000-25145600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:25141000-25145600	Weak transcription	Brain Substantia Nigra	brain
22	chr10:25141000-25146000	Weak transcription	Fetal Stomach	stomach
23	chr10:25141000-25146200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:25141000-25146200	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:25141000-25146200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr10:25141000-25146400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr10:25141000-25146400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:25141000-25147200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr10:25141000-25147600	Weak transcription	Aorta	Aorta
30	chr10:25141200-25143400	Enhancers	Fetal Brain Female	brain
31	chr10:25141200-25145400	Weak transcription	Brain Hippocampus Middle	brain
32	chr10:25141200-25145600	Weak transcription	Brain Angular Gyrus	brain
33	chr10:25141200-25145600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr10:25141200-25146000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr10:25141200-25146200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr10:25141200-25146400	Weak transcription	NH-A	brain
37	chr10:25141400-25145600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:25141600-25145600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:25141600-25145600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr10:25141600-25146200	Weak transcription	HUVEC	blood vessel
41	chr10:25142000-25145400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:25142200-25143200	Weak transcription	Brain Germinal Matrix	brain
43	chr10:25142200-25143200	Weak transcription	Fetal Brain Male	brain
44	chr10:25142200-25145400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr10:25142600-25143800	Enhancers	Fetal Kidney	kidney
46	chr10:25142600-25144000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:25142600-25145200	Weak transcription	Fetal Intestine Large	intestine
48	chr10:25142800-25143200	Weak transcription	NHDF-Ad	bronchial
49	chr10:25143000-25145600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links