Variant report

Variant	esv3440915
Chromosome Location	chr10:99257587-99260135
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:99258293-99258365	K562	blood:	n/a	n/a
2	ARID3A	chr10:99257446-99258580	HepG2	liver:	n/a	n/a
3	ATF2	chr10:99257859-99258257	GM12878	blood:	n/a	n/a
4	ATF3	chr10:99257400-99258016	A549	lung:	n/a	n/a
5	ATF3	chr10:99257759-99258622	GM12878	blood:	n/a	chr10:99258244-99258264 chr10:99258238-99258247 chr10:99258410-99258419
6	ATF3	chr10:99258121-99258641	K562	blood:	n/a	chr10:99258244-99258264 chr10:99258238-99258247 chr10:99258410-99258419
7	ATF3	chr10:99257910-99258563	HepG2	liver:	n/a	chr10:99258244-99258264 chr10:99258238-99258247 chr10:99258410-99258419
8	ATF3	chr10:99257963-99258550	H1-hESC	embryonic stem cell:	n/a	chr10:99258244-99258264 chr10:99258238-99258247 chr10:99258410-99258419
9	ATF3	chr10:99257932-99258503	HepG2	liver:	n/a	chr10:99258244-99258264 chr10:99258238-99258247 chr10:99258410-99258419
10	ATF3	chr10:99258107-99258396	GM12878	blood:	n/a	chr10:99258244-99258264 chr10:99258238-99258247
11	ATF3	chr10:99258405-99258680	H1-hESC	embryonic stem cell:	n/a	chr10:99258670-99258679 chr10:99258410-99258419
12	ATF3	chr10:99258019-99258393	H1-hESC	embryonic stem cell:	n/a	chr10:99258244-99258264 chr10:99258238-99258247
13	BACH1	chr10:99257999-99258223	H1-hESC	embryonic stem cell:	n/a	n/a
14	BACH1	chr10:99257554-99257786	H1-hESC	embryonic stem cell:	n/a	n/a
15	BCL3	chr10:99257417-99258085	A549	lung:	n/a	n/a
16	BCLAF1	chr10:99257314-99258265	GM12878	blood:	n/a	chr10:99258234-99258247 chr10:99258242-99258255
17	BHLHE40	chr10:99257462-99258825	HepG2	liver:	n/a	chr10:99258255-99258264 chr10:99258254-99258263 chr10:99258255-99258264 chr10:99257608-99257624 chr10:99258256-99258265 chr10:99258253-99258266
18	BHLHE40	chr10:99257292-99258845	GM12878	blood:	n/a	chr10:99258255-99258264 chr10:99258254-99258263 chr10:99258255-99258264 chr10:99257608-99257624 chr10:99258256-99258265 chr10:99258253-99258266
19	BHLHE40	chr10:99257513-99258756	K562	blood:	n/a	chr10:99258255-99258264 chr10:99258254-99258263 chr10:99258255-99258264 chr10:99257608-99257624 chr10:99258256-99258265 chr10:99258253-99258266
20	BHLHE40	chr10:99258067-99258582	HepG2	liver:	n/a	chr10:99258255-99258264 chr10:99258254-99258263 chr10:99258255-99258264 chr10:99258256-99258265 chr10:99258253-99258266
21	BHLHE40	chr10:99258013-99258517	A549	lung:	n/a	chr10:99258255-99258264 chr10:99258254-99258263 chr10:99258255-99258264 chr10:99258256-99258265 chr10:99258253-99258266
22	BRCA1	chr10:99257716-99258020	H1-hESC	embryonic stem cell:	n/a	n/a
23	BRCA1	chr10:99257550-99258665	Hela-S3	cervix:	n/a	n/a
24	BRCA1	chr10:99257989-99258265	HepG2	liver:	n/a	n/a
25	BRCA1	chr10:99258738-99258838	HepG2	liver:	n/a	n/a
26	CBX3	chr10:99257406-99258334	K562	blood:	n/a	n/a
27	CCNT2	chr10:99257466-99259518	K562	blood:	n/a	chr10:99258238-99258247 chr10:99259272-99259281 chr10:99258294-99258303
28	CEBPB	chr10:99259820-99260101	H1-hESC	embryonic stem cell:	n/a	n/a
29	CEBPB	chr10:99257155-99258026	GM12878	blood:	n/a	n/a
30	CEBPB	chr10:99259681-99260096	HepG2	liver:	n/a	n/a
31	CEBPB	chr10:99259617-99260168	IMR90	lung:	n/a	n/a
32	CEBPB	chr10:99259888-99260064	HepG2	liver:	n/a	n/a
33	CEBPB	chr10:99259925-99260097	Hela-S3	cervix:	n/a	n/a
34	CEBPB	chr10:99258099-99258493	Hela-S3	cervix:	n/a	n/a
35	CEBPD	chr10:99257941-99258319	HepG2	liver:	n/a	n/a
36	CEBPD	chr10:99258483-99258905	HepG2	liver:	n/a	n/a
37	CEBPD	chr10:99257568-99257805	HepG2	liver:	n/a	n/a
38	CEBPD	chr10:99257984-99258242	HepG2	liver:	n/a	n/a
39	CHD1	chr10:99258990-99259028	H1-hESC	embryonic stem cell:	n/a	n/a
40	CHD1	chr10:99257321-99258173	GM12878	blood:	n/a	n/a
41	CHD1	chr10:99257716-99258098	H1-hESC	embryonic stem cell:	n/a	n/a
42	CHD2	chr10:99257421-99258869	Hela-S3	cervix:	n/a	chr10:99258239-99258249
43	CHD2	chr10:99258410-99258793	HepG2	liver:	n/a	n/a
44	CHD2	chr10:99257554-99258192	HepG2	liver:	n/a	n/a
45	CHD2	chr10:99257481-99258526	H1-hESC	embryonic stem cell:	n/a	chr10:99258239-99258249
46	CHD2	chr10:99259256-99259371	K562	blood:	n/a	n/a
47	CHD2	chr10:99257432-99259011	GM12878	blood:	n/a	chr10:99258239-99258249
48	CHD2	chr10:99257528-99258190	K562	blood:	n/a	n/a
49	CREB1	chr10:99257335-99258905	HepG2	liver:	n/a	n/a
50	CREB1	chr10:99257374-99257739	ECC-1	luminal epithelium:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:99258018-99258068	BJ	skin:	n/a
2	chr10:99258018-99258068	BJ	skin:	n/a
3	chr10:99258623-99258673	PrEC	prostate:	n/a
4	chr10:99259721-99259771	PANC-1	pancreas:	n/a
5	chr10:99259519-99259569	GM06990	blood:	n/a
6	chr10:99258623-99258673	HRCEpiC	kidney:	n/a
7	chr10:99258505-99258555	Caco-2	colon:	n/a
8	chr10:99259519-99259569	SK-N-SH_RA	brain:	n/a
9	chr10:99258299-99258349	MCF10A-Er-Src	breast:	n/a
10	chr10:99258299-99258349	LNCaP	prostate:	n/a
11	chr10:99258646-99258696	GM12892	blood:	n/a
12	chr10:99259519-99259569	HCT-116	colon:	n/a
13	chr10:99258646-99258696	AG04450	lung:	fetal
14	chr10:99257674-99257724	GM19239	blood:	n/a
15	chr10:99259721-99259771	HCM	heart:	n/a
16	chr10:99258985-99259035	HRE	kidney:	n/a
17	chr10:99258388-99258438	IMR90	lung:	fetal
18	chr10:99258623-99258673	AoSMC	blood vessel:	n/a
19	chr10:99258646-99258696	HCPEpiC	choroid plexus:	n/a
20	chr10:99258505-99258555	GM12878	blood:	n/a
21	chr10:99259721-99259771	A549	lung:	n/a
22	chr10:99259721-99259771	HCT-116	colon:	n/a
23	chr10:99258515-99258565	HNPCEpiC	eye:	n/a
24	chr10:99258018-99258068	MCF10A-Er-Src	breast:	n/a
25	chr10:99259721-99259771	BJ	skin:	n/a
26	chr10:99258646-99258696	SK-N-MC	brain:	n/a
27	chr10:99258388-99258438	ovcar-3	ovarian:	n/a
28	chr10:99258018-99258068	GM06990	blood:	n/a
29	chr10:99259738-99259788	HPAEpiC	pulmonary alveolar:	n/a
30	chr10:99258443-99258493	HCF	heart:	n/a
31	chr10:99258985-99259035	HEK293	kidney:	embryo
32	chr10:99257674-99257724	AG09319	gingival:	n/a
33	chr10:99258388-99258438	SK-N-SH_RA	brain:	n/a
34	chr10:99259519-99259569	HUVEC	blood vessel:	n/a
35	chr10:99258299-99258349	SK-N-SH	brain:	n/a
36	chr10:99258443-99258493	AG09319	gingival:	n/a
37	chr10:99258642-99258692	AG10803	skin:	n/a
38	chr10:99258642-99258692	Jurkat	blood:	n/a
39	chr10:99259519-99259569	CMK	blood:	n/a
40	chr10:99258985-99259035	GM12891	blood:	n/a
41	chr10:99258515-99258565	NHBE	bronchial:	n/a
42	chr10:99258829-99258879	GM12891	blood:	n/a
43	chr10:99258642-99258692	NH-A	brain:	n/a
44	chr10:99257674-99257724	HRPEpiC	eye:	n/a
45	chr10:99257699-99257749	BJ	skin:	n/a
46	chr10:99258829-99258879	U87	brain:	n/a
47	chr10:99258515-99258565	AoSMC	blood vessel:	n/a
48	chr10:99258496-99258546	HCF	heart:	n/a
49	chr10:99258985-99259035	HCM	heart:	n/a
50	chr10:99258496-99258546	PANC-1	pancreas:	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:99184102..99187983-chr10:99256299..99259028,4	MCF-7	breast:
2	chr10:99259143..99261299-chr10:99264874..99266683,2	K562	blood:
3	chr10:99205621..99207743-chr10:99257584..99260294,2	MCF-7	breast:
4	chr10:99255590..99258774-chr10:99331777..99334688,4	MCF-7	breast:
5	chr10:99205729..99207747-chr10:99256104..99259230,4	MCF-7	breast:
6	chr10:99257419..99257994-chr19:1591863..1592383,2	Hela-S3	cervix:
7	chr10:70715359..70716001-chr10:99257992..99258949,2	NB4	blood:
8	chr10:99222186..99224911-chr10:99257446..99259011,2	MCF-7	breast:
9	chr10:99255036..99258001-chr10:99391751..99393858,2	K562	blood:
10	chr10:99258633..99260480-chr10:99272393..99275026,3	MCF-7	breast:
11	chr10:99256769..99258998-chr15:71406274..71408704,2	MCF-7	breast:
12	chr10:99256903..99258777-chr10:99359333..99362265,3	MCF-7	breast:
13	chr10:99257383..99259278-chr10:99348125..99351802,3	MCF-7	breast:
14	chr10:99257277..99258845-chr10:99472952..99474913,2	MCF-7	breast:
15	chr10:99254835..99256478-chr10:99258857..99262357,3	MCF-7	breast:
16	chr10:99256533..99260506-chr10:99329939..99335950,10	MCF-7	breast:
17	chr10:99256761..99259494-chr10:99495841..99497583,3	K562	blood:
18	chr10:99257811..99258591-chr7:27170109..27170609,2	NB4	blood:
19	chr10:99257860..99258824-chr19:39109137..39109745,2	NB4	blood:
20	chr1:92948945..92949798-chr10:99257544..99258444,2	NB4	blood:
21	chr10:99226678..99229676-chr10:99256675..99258497,3	K562	blood:
22	chr10:99204416..99207741-chr10:99255231..99259773,5	K562	blood:
23	chr10:99158733..99161055-chr10:99257726..99260280,2	MCF-7	breast:
24	chr10:99229450..99232386-chr10:99257902..99259455,2	MCF-7	breast:
25	chr10:99230735..99233202-chr10:99255020..99257889,3	MCF-7	breast:
26	chr10:99159358..99162440-chr10:99256931..99260180,3	MCF-7	breast:
27	chr10:99186982..99190152-chr10:99256815..99259689,3	K562	blood:

Variant related genes	Relation type
UBTD1	TF binding region
MMS19	TF binding region
UBTD1	CpG island
MMS19	CpG island
ENSG00000178982	chromatin interactions
ENSG00000155254	chromatin interactions
ENSG00000203942	chromatin interactions
ENSG00000155229	chromatin interactions
ENSG00000171160	chromatin interactions
ENSG00000197576	chromatin interactions
ENSG00000165887	chromatin interactions
ENSG00000225362	chromatin interactions
ENSG00000171314	chromatin interactions
ENSG00000155256	chromatin interactions
ENSG00000241935	chromatin interactions
ENSG00000071655	chromatin interactions
ENSG00000052749	chromatin interactions
ENSG00000171311	chromatin interactions
ENSG00000224474	chromatin interactions
ENSG00000104814	chromatin interactions
ENSG00000171307	chromatin interactions
ENSG00000165732	chromatin interactions
ENSG00000162676	chromatin interactions
ENSG00000231970	chromatin interactions

Extended variants
information (count: 100 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:100 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs564412256	chr10:99257618-99257619	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
2	rs29001252	chr10:99257636-99257637	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
3	rs29001251	chr10:99257649-99257650	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
4	rs29001250	chr10:99257670-99257671	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	17 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs189045442	chr10:99257672-99257673	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
6	rs29001249	chr10:99257685-99257686	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
7	rs563308756	chr10:99257718-99257719	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
8	rs550317181	chr10:99257725-99257726	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
9	rs569082943	chr10:99257742-99257743	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
10	rs548572151	chr10:99257775-99257776	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
11	rs548698392	chr10:99257776-99257777	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
12	rs7915501	chr10:99257815-99257816	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	18 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
13	rs114287923	chr10:99257843-99257844	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	18 gene(s)	Overlapped CNVs	n/a
14	rs29001248	chr10:99257882-99257883	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	20 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs29001247	chr10:99257891-99257892	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
16	rs534407399	chr10:99257898-99257899	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
17	rs571118351	chr10:99257933-99257934	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
18	rs374200484	chr10:99257955-99257956	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
19	rs556791851	chr10:99257959-99257960	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
20	rs143993548	chr10:99257975-99257976	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
21	rs542339738	chr10:99257987-99257988	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
22	rs554675252	chr10:99257999-99258000	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
23	rs370977937	chr10:99258012-99258013	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
24	rs148701971	chr10:99258015-99258016	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
25	rs29001246	chr10:99258025-99258026	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	19 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs29001245	chr10:99258026-99258027	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	19 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs372895081	chr10:99258080-99258081	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
28	rs199503322	chr10:99258085-99258086	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
29	rs374241112	chr10:99258127-99258128	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
30	rs576915224	chr10:99258132-99258133	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
31	rs201996306	chr10:99258155-99258156	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
32	rs371325200	chr10:99258171-99258172	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
33	rs375416974	chr10:99258202-99258203	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
34	rs562528648	chr10:99258213-99258214	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
35	rs3750558	chr10:99258223-99258224	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs374834950	chr10:99258285-99258286	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
37	rs192621161	chr10:99258342-99258343	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
38	rs560598307	chr10:99258370-99258371	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
39	rs29001244	chr10:99258376-99258377	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
40	rs377734396	chr10:99258396-99258397	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
41	rs552555176	chr10:99258401-99258402	Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
42	rs29001243	chr10:99258404-99258405	Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
43	rs372542284	chr10:99258414-99258415	Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
44	rs538529162	chr10:99258441-99258442	Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
45	rs550529245	chr10:99258504-99258505	Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
46	rs17112837	chr10:99258519-99258520	Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs17112841	chr10:99258533-99258534	Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs29001242	chr10:99258534-99258535	Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
49	rs372503008	chr10:99258549-99258550	Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
50	rs533688206	chr10:99258578-99258579	Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16912164	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Autosomal dominant partial epilepsy	18472482	CNVD
Breast cancer	16397240	CNVD
Myxofibrosarcoma	16751306	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Ependymoma	20639864	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:417 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99256400-99259400	Active TSS	K562	blood
2	chr10:99256600-99257800	Flanking Active TSS	Fetal Brain Female	brain
3	chr10:99256600-99258000	Flanking Active TSS	Primary T cells from cord blood	blood
4	chr10:99256600-99258000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:99256600-99258000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:99256800-99257600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
7	chr10:99256800-99257600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:99256800-99257600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:99256800-99257600	Flanking Active TSS	Fetal Intestine Small	intestine
10	chr10:99256800-99257800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr10:99256800-99258000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:99256800-99258000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:99256800-99259800	Active TSS	H9 Cell Line	embryonic stem cell
14	chr10:99256800-99260000	Active TSS	Aorta	Aorta
15	chr10:99257000-99257600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:99257000-99257600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:99257000-99257600	Flanking Active TSS	Liver	Liver
18	chr10:99257000-99257600	Active TSS	Brain Germinal Matrix	brain
19	chr10:99257000-99257600	Flanking Active TSS	Fetal Thymus	thymus
20	chr10:99257000-99257600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
21	chr10:99257000-99258000	Flanking Active TSS	Primary B cells from cord blood	blood
22	chr10:99257000-99259000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:99257000-99259400	Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr10:99257000-99259400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:99257000-99259400	Active TSS	Stomach Smooth Muscle	stomach
26	chr10:99257000-99259400	Active TSS	GM12878-XiMat	blood
27	chr10:99257000-99259600	Active TSS	Fetal Muscle Leg	muscle
28	chr10:99257000-99259600	Active TSS	NHEK	skin
29	chr10:99257000-99259800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:99257000-99259800	Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr10:99257000-99259800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:99257000-99259800	Active TSS	Brain Inferior Temporal Lobe	brain
33	chr10:99257000-99259800	Active TSS	A549	lung
34	chr10:99257000-99259800	Active TSS	HSMMtube	muscle
35	chr10:99257000-99259800	Active TSS	NHDF-Ad	bronchial
36	chr10:99257000-99259800	Active TSS	NHLF	lung
37	chr10:99257000-99260400	Active TSS	Brain Angular Gyrus	brain
38	chr10:99257000-99260400	Active TSS	HSMM	muscle
39	chr10:99257200-99257600	Flanking Active TSS	Primary B cells from peripheral blood	blood
40	chr10:99257200-99257600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
41	chr10:99257200-99257600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
42	chr10:99257200-99257600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:99257200-99257600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr10:99257200-99257600	Flanking Active TSS	Fetal Intestine Large	intestine
45	chr10:99257200-99257600	Active TSS	Right Atrium	heart
46	chr10:99257200-99257800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
47	chr10:99257200-99257800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr10:99257200-99257800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
49	chr10:99257200-99257800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
50	chr10:99257200-99257800	Flanking Active TSS	Fetal Brain Male	brain

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