Variant report

Variant	rs29001252
Chromosome Location	chr10:99257636-99257637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GTF2F1	chr10:99257348-99258436	Hela-S3	cervix:	n/a	n/a
2	NFIC	chr10:99257618-99258038	HepG2	liver:	n/a	n/a
3	ARID3A	chr10:99257446-99258580	HepG2	liver:	n/a	n/a
4	TAF1	chr10:99257480-99257823	GM12878	blood:	n/a	n/a
5	TAF1	chr10:99257380-99257828	SK-N-SH	brain:	n/a	n/a
6	RAD21	chr10:99257373-99258798	IMR90	lung:	n/a	chr10:99258614-99258624 chr10:99258781-99258791 chr10:99257519-99257533 chr10:99258728-99258738
7	ELF1	chr10:99257380-99258520	MCF-7	breast:	n/a	chr10:99258354-99258363
8	RFX5	chr10:99257427-99258815	Hela-S3	cervix:	n/a	n/a
9	MAZ	chr10:99257433-99259409	K562	blood:	n/a	chr10:99258254-99258265 chr10:99258920-99258930 chr10:99258255-99258264 chr10:99259189-99259199 chr10:99258671-99258681 chr10:99259326-99259336
10	POLR2A	chr10:99257433-99258866	GM18951	blood:	n/a	n/a
11	POLR2A	chr10:99257272-99258520	GM12878	blood:	n/a	n/a
12	MAX	chr10:99257348-99258696	H1-hESC	embryonic stem cell:	n/a	chr10:99258254-99258265 chr10:99258255-99258264 chr10:99258671-99258681
13	MXI1	chr10:99257451-99258660	K562	blood:	n/a	n/a
14	YY1	chr10:99257458-99258479	A549	lung:	n/a	chr10:99258238-99258247 chr10:99258010-99258024
15	POLR2A	chr10:99257471-99258931	HEK293	kidney:	n/a	n/a
16	SP1	chr10:99257324-99258857	A549	lung:	n/a	chr10:99258239-99258248 chr10:99258581-99258593 chr10:99258237-99258249 chr10:99258239-99258248 chr10:99258293-99258304 chr10:99258293-99258305 chr10:99258583-99258592 chr10:99258429-99258443 chr10:99258294-99258304 chr10:99258237-99258249 chr10:99258295-99258304 chr10:99258582-99258592 chr10:99258295-99258304 chr10:99258293-99258305 chr10:99258294-99258304 chr10:99258562-99258576 chr10:99258290-99258304 chr10:99258294-99258303 chr10:99258238-99258248 chr10:99258234-99258248 chr10:99258555-99258568 chr10:99258668-99258680 chr10:99258583-99258592 chr10:99258670-99258679 chr10:99258238-99258247 chr10:99258238-99258248 chr10:99258582-99258591
17	NRF1	chr10:99257331-99258604	Hela-S3	cervix:	n/a	chr10:99258007-99258016 chr10:99258238-99258247 chr10:99258197-99258208
18	POLR2A	chr10:99257157-99259066	PFSK-1	brain:	n/a	n/a
19	USF1	chr10:99257520-99258851	SK-N-SH	brain:	n/a	chr10:99258255-99258264 chr10:99258254-99258263 chr10:99258255-99258264 chr10:99257608-99257624 chr10:99258256-99258265 chr10:99258253-99258266
20	POLR2A	chr10:99257369-99258670	GM15510	blood:	n/a	n/a
21	NFIC	chr10:99257347-99259530	ECC-1	luminal epithelium:	n/a	n/a
22	E2F4	chr10:99257489-99258708	MCF10A-Er-Src	breast:	n/a	chr10:99258670-99258679 chr10:99257949-99257961 chr10:99258238-99258247
23	YY1	chr10:99257484-99257753	A549	lung:	n/a	n/a
24	BHLHE40	chr10:99257292-99258845	GM12878	blood:	n/a	chr10:99258255-99258264 chr10:99258254-99258263 chr10:99258255-99258264 chr10:99257608-99257624 chr10:99258256-99258265 chr10:99258253-99258266
25	MAX	chr10:99257409-99258850	MCF-7	breast:	n/a	chr10:99258254-99258265 chr10:99258255-99258264 chr10:99258671-99258681
26	HCFC1	chr10:99257445-99258383	K562	blood:	n/a	n/a
27	PML	chr10:99257415-99258397	MCF-7	breast:	n/a	n/a
28	NFYB	chr10:99257425-99257759	Hela-S3	cervix:	n/a	n/a
29	POU2F2	chr10:99257362-99258328	GM12878	blood:	n/a	n/a
30	TAF1	chr10:99257454-99257836	K562	blood:	n/a	n/a
31	MAZ	chr10:99257613-99259393	HepG2	liver:	n/a	chr10:99258254-99258265 chr10:99258920-99258930 chr10:99258255-99258264 chr10:99259189-99259199 chr10:99258671-99258681 chr10:99259326-99259336
32	POLR2A	chr10:99257503-99258166	HepG2	liver:	n/a	n/a
33	BCL3	chr10:99257417-99258085	A549	lung:	n/a	n/a
34	MAX	chr10:99257444-99258770	Hela-S3	cervix:	n/a	chr10:99258254-99258265 chr10:99258255-99258264 chr10:99258671-99258681
35	SIN3AK20	chr10:99257467-99258430	MCF-7	breast:	n/a	n/a
36	POLR2A	chr10:99257471-99258529	K562	blood:	n/a	n/a
37	SIN3AK20	chr10:99257482-99258243	A549	lung:	n/a	n/a
38	MTA3	chr10:99257512-99258215	GM12878	blood:	n/a	n/a
39	POLR2A	chr10:99257391-99258844	Hela-S3	cervix:	n/a	n/a
40	MYBL2	chr10:99257384-99258397	HepG2	liver:	n/a	n/a
41	TAF1	chr10:99257425-99258249	GM12891	blood:	n/a	n/a
42	HMGN3	chr10:99257521-99259484	K562	blood:	n/a	n/a
43	GTF2F1	chr10:99257600-99257698	H1-hESC	embryonic stem cell:	n/a	n/a
44	CTCF	chr10:99257607-99257678	GM12892	blood:	n/a	n/a
45	MAX	chr10:99257406-99259409	NB4	blood:	n/a	chr10:99258254-99258265 chr10:99258920-99258930 chr10:99258255-99258264 chr10:99259189-99259199 chr10:99258671-99258681 chr10:99259326-99259336
46	POLR2A	chr10:99257160-99259048	U87	brain:	n/a	n/a
47	MAX	chr10:99257467-99258693	HUVEC	blood vessel:	n/a	chr10:99258254-99258265 chr10:99258255-99258264 chr10:99258671-99258681
48	MAX	chr10:99257428-99257828	K562	blood:	n/a	n/a
49	JUND	chr10:99257394-99258936	A549	lung:	n/a	chr10:99258409-99258418
50	POLR2A	chr10:99257457-99258508	MCF10A-Er-Src	breast:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:99257608-99257658	NB4	blood:	n/a
2	chr10:99257608-99257658	RPTEC	kidney:	n/a
3	chr10:99257608-99257658	AG04449	skin:	fetal
4	chr10:99257608-99257658	Hepatocyte	liver:	n/a
5	chr10:99257608-99257658	GM12892	blood:	n/a
6	chr10:99257608-99257658	SK-N-SH	brain:	n/a
7	chr10:99257608-99257658	HEEpiC	esophagus:	n/a
8	chr10:99257608-99257658	HCPEpiC	choroid plexus:	n/a
9	chr10:99257608-99257658	HL-60	blood:	n/a
10	chr10:99257608-99257658	IMR90	lung:	fetal
11	chr10:99257608-99257658	ECC-1	luminal epithelium:	n/a
12	chr10:99257608-99257658	HRE	kidney:	n/a
13	chr10:99257608-99257658	CMK	blood:	n/a
14	chr10:99257608-99257658	PFSK-1	brain:	n/a
15	chr10:99257608-99257658	SAEC	small airway:	n/a
16	chr10:99257608-99257658	HNPCEpiC	eye:	n/a
17	chr10:99257608-99257658	MCF-7	breast:	n/a
18	chr10:99257608-99257658	Jurkat	blood:	n/a
19	chr10:99257608-99257658	BJ	skin:	n/a
20	chr10:99257608-99257658	GM12891	blood:	n/a
21	chr10:99257608-99257658	K562	blood:	n/a
22	chr10:99257608-99257658	GM19239	blood:	n/a
23	chr10:99257608-99257658	SK-N-SH_RA	brain:	n/a
24	chr10:99257608-99257658	BE2_C	brain:	n/a
25	chr10:99257608-99257658	Caco-2	colon:	n/a
26	chr10:99257608-99257658	AG09319	gingival:	n/a
27	chr10:99257608-99257658	NHDF-neo	bronchial:	n/a
28	chr10:99257608-99257658	GM12878	blood:	n/a
29	chr10:99257608-99257658	NT2-D1	testis:	n/a
30	chr10:99257608-99257658	NHBE	bronchial:	n/a
31	chr10:99257608-99257658	NH-A	brain:	n/a
32	chr10:99257608-99257658	HCT-116	colon:	n/a
33	chr10:99257608-99257658	GM06990	blood:	n/a
34	chr10:99257608-99257658	HMEC	breast:	n/a
35	chr10:99257608-99257658	LNCaP	prostate:	n/a
36	chr10:99257608-99257658	HPAEpiC	pulmonary alveolar:	n/a
37	chr10:99257608-99257658	HAEpiC	amniotic membrane:	n/a
38	chr10:99257608-99257658	H1-hESC	embryonic stem cell:	embryo
39	chr10:99257608-99257658	AG04450	lung:	fetal
40	chr10:99257608-99257658	ovcar-3	ovarian:	n/a
41	chr10:99257608-99257658	SKMC	muscle:	n/a
42	chr10:99257608-99257658	A549	lung:	n/a
43	chr10:99257608-99257658	AoSMC	blood vessel:	n/a
44	chr10:99257608-99257658	SK-N-MC	brain:	n/a
45	chr10:99257608-99257658	HRPEpiC	eye:	n/a
46	chr10:99257608-99257658	U87	brain:	n/a
47	chr10:99257608-99257658	ProgFib	skin:	n/a
48	chr10:99257608-99257658	AG09309	skin:	n/a
49	chr10:99257608-99257658	HCF	heart:	n/a
50	chr10:99257608-99257658	HUVEC	blood vessel:	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:99256769..99258998-chr15:71406274..71408704,2	MCF-7	breast:
2	chr10:99205729..99207747-chr10:99256104..99259230,4	MCF-7	breast:
3	chr10:99257383..99259278-chr10:99348125..99351802,3	MCF-7	breast:
4	chr10:99184102..99187983-chr10:99256299..99259028,4	MCF-7	breast:
5	chr10:99226678..99229676-chr10:99256675..99258497,3	K562	blood:
6	chr10:99256761..99259494-chr10:99495841..99497583,3	K562	blood:
7	chr10:99255590..99258774-chr10:99331777..99334688,4	MCF-7	breast:
8	chr10:99255036..99258001-chr10:99391751..99393858,2	K562	blood:
9	chr1:92948945..92949798-chr10:99257544..99258444,2	NB4	blood:
10	chr10:99256903..99258777-chr10:99359333..99362265,3	MCF-7	breast:
11	chr10:99159358..99162440-chr10:99256931..99260180,3	MCF-7	breast:
12	chr10:99204416..99207741-chr10:99255231..99259773,5	K562	blood:
13	chr10:99222186..99224911-chr10:99257446..99259011,2	MCF-7	breast:
14	chr10:99186982..99190152-chr10:99256815..99259689,3	K562	blood:
15	chr10:99205621..99207743-chr10:99257584..99260294,2	MCF-7	breast:
16	chr10:99256533..99260506-chr10:99329939..99335950,10	MCF-7	breast:
17	chr10:99230735..99233202-chr10:99255020..99257889,3	MCF-7	breast:
18	chr10:99257419..99257994-chr19:1591863..1592383,2	Hela-S3	cervix:
19	chr10:99257277..99258845-chr10:99472952..99474913,2	MCF-7	breast:

Variant related genes	Relation type
UBTD1	TF binding region
UBTD1	CpG island
ENSG00000071655	Chromatin interaction
ENSG00000155254	Chromatin interaction
ENSG00000203942	Chromatin interaction
ENSG00000155229	Chromatin interaction
ENSG00000224474	Chromatin interaction
ENSG00000171307	Chromatin interaction
ENSG00000225362	Chromatin interaction
ENSG00000171311	Chromatin interaction
ENSG00000171314	Chromatin interaction
ENSG00000155256	Chromatin interaction
ENSG00000162676	Chromatin interaction
ENSG00000052749	Chromatin interaction
ENSG00000171160	Chromatin interaction
ENSG00000165887	Chromatin interaction
ENSG00000231970	Chromatin interaction
ENSG00000241935	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv3440915	chr10:99257587-99260135	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99256400-99259400	Active TSS	K562	blood
2	chr10:99256600-99257800	Flanking Active TSS	Fetal Brain Female	brain
3	chr10:99256600-99258000	Flanking Active TSS	Primary T cells from cord blood	blood
4	chr10:99256600-99258000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:99256600-99258000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:99256800-99257800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
7	chr10:99256800-99258000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:99256800-99258000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:99256800-99259800	Active TSS	H9 Cell Line	embryonic stem cell
10	chr10:99256800-99260000	Active TSS	Aorta	Aorta
11	chr10:99257000-99258000	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr10:99257000-99259000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:99257000-99259400	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr10:99257000-99259400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:99257000-99259400	Active TSS	Stomach Smooth Muscle	stomach
16	chr10:99257000-99259400	Active TSS	GM12878-XiMat	blood
17	chr10:99257000-99259600	Active TSS	Fetal Muscle Leg	muscle
18	chr10:99257000-99259600	Active TSS	NHEK	skin
19	chr10:99257000-99259800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:99257000-99259800	Active TSS	Breast Myoepithelial Primary Cells	Breast
21	chr10:99257000-99259800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:99257000-99259800	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr10:99257000-99259800	Active TSS	A549	lung
24	chr10:99257000-99259800	Active TSS	HSMMtube	muscle
25	chr10:99257000-99259800	Active TSS	NHDF-Ad	bronchial
26	chr10:99257000-99259800	Active TSS	NHLF	lung
27	chr10:99257000-99260400	Active TSS	Brain Angular Gyrus	brain
28	chr10:99257000-99260400	Active TSS	HSMM	muscle
29	chr10:99257200-99257800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr10:99257200-99257800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
31	chr10:99257200-99257800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr10:99257200-99257800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr10:99257200-99257800	Flanking Active TSS	Fetal Brain Male	brain
34	chr10:99257200-99257800	Flanking Active TSS	Placenta	Placenta
35	chr10:99257200-99258000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
36	chr10:99257200-99258000	Flanking Active TSS	Primary hematopoietic stem cells	blood
37	chr10:99257200-99258000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:99257200-99258000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:99257200-99258000	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr10:99257200-99258000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
41	chr10:99257200-99258000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr10:99257200-99259200	Active TSS	Hela-S3	cervix
43	chr10:99257200-99259400	Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr10:99257200-99259400	Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr10:99257200-99259600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr10:99257200-99259600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:99257200-99259600	Active TSS	iPS-15b Cell Line	embryonic stem cell
48	chr10:99257200-99259600	Active TSS	Brain Cingulate Gyrus	brain
49	chr10:99257200-99259600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr10:99257200-99259800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links