Variant report

Variant	esv3448923
Chromosome Location	chr10:54114397-54114575
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:54071543..54073516-chr10:54113139..54115614,2	MCF-7	breast:
2	chr10:54111958..54114420-chr10:54199763..54201853,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs578151772	chr10:54114421-54114422	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs1372107	chr10:54114458-54114459	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs185985952	chr10:54114459-54114460	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs140546574	chr10:54114475-54114476	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs190440946	chr10:54114534-54114535	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	21956041	CNVD
Developmental delay	21948486	CNVD
Dysmorphic features	21948486	CNVD
Epilepsy	21948486	CNVD
Intellectual disability	21948486	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54111200-54114400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr10:54111200-54114400	Enhancers	HMEC	breast
3	chr10:54111200-54114400	Enhancers	HSMM	muscle
4	chr10:54112200-54114400	Enhancers	NHLF	lung
5	chr10:54112400-54114600	Weak transcription	NHEK	skin
6	chr10:54112400-54115600	Weak transcription	HUVEC	blood vessel
7	chr10:54113000-54114400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:54113000-54114400	Enhancers	Osteobl	bone
9	chr10:54113200-54114400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:54113400-54114400	Enhancers	NHDF-Ad	bronchial
11	chr10:54113400-54117200	Enhancers	HepG2	liver
12	chr10:54113600-54114400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:54113800-54114400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:54113800-54114600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:54113800-54116000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:54114000-54115200	Weak transcription	A549	lung
17	chr10:54114000-54116200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:54114000-54116400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:54114000-54118600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:54114200-54115600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:54114200-54117400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:54114400-54115400	Weak transcription	NHDF-Ad	bronchial
23	chr10:54114400-54115400	Weak transcription	Osteobl	bone
24	chr10:54114400-54115600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:54114400-54115600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:54114400-54115600	Weak transcription	HSMM	muscle
27	chr10:54114400-54118800	Weak transcription	HMEC	breast
28	chr10:54114400-54119200	Weak transcription	Muscle Satellite Cultured Cells	--

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