Variant report

Variant	rs1372107
Chromosome Location	chr10:54114458-54114459
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10740457	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10762708	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10824390	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11001719	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11001721	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11001723	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11814479	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1441121	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1441123	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1441124	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7079513	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73331255	0.85[AMR][1000 genomes]
rs7904997	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs894104	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv895399	chr10:53900872-54219820	Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3448923	chr10:54114397-54114575	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54112400-54114600	Weak transcription	NHEK	skin
2	chr10:54112400-54115600	Weak transcription	HUVEC	blood vessel
3	chr10:54113400-54117200	Enhancers	HepG2	liver
4	chr10:54113800-54114600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:54113800-54116000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:54114000-54115200	Weak transcription	A549	lung
7	chr10:54114000-54116200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:54114000-54116400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:54114000-54118600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:54114200-54115600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:54114200-54117400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:54114400-54115400	Weak transcription	NHDF-Ad	bronchial
13	chr10:54114400-54115400	Weak transcription	Osteobl	bone
14	chr10:54114400-54115600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:54114400-54115600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:54114400-54115600	Weak transcription	HSMM	muscle
17	chr10:54114400-54118800	Weak transcription	HMEC	breast
18	chr10:54114400-54119200	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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