Variant report

Variant	esv3476111
Chromosome Location	chr7:52962807-52965185
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COBL-6	chr7:52964387-52965500	NONHSAT120623

Variant related genes	Relation type
ZNF148	miRNA target sites

Extended variants
information (count: 40 )
Associated
traits (count: 120 )

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs189084465	chr7:52964397-52964398	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs552375353	chr7:52964405-52964406	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs565621735	chr7:52964433-52964434	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs528153499	chr7:52964457-52964458	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs117559264	chr7:52964478-52964479	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs548000201	chr7:52964492-52964493	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs35804710	chr7:52964496-52964497	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs567999526	chr7:52964514-52964515	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs59443321	chr7:52964518-52964519	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs556432172	chr7:52964525-52964526	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs560554112	chr7:52964553-52964554	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs76984210	chr7:52964563-52964564	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs193151640	chr7:52964564-52964565	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs116447962	chr7:52964633-52964634	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs184440189	chr7:52964642-52964643	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs188429444	chr7:52964658-52964659	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs112494490	chr7:52964693-52964694	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs191711632	chr7:52964723-52964724	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs554769682	chr7:52964762-52964763	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs144153311	chr7:52964794-52964795	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs543883990	chr7:52964843-52964844	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs563550870	chr7:52964856-52964857	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs532482381	chr7:52964887-52964888	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs545792448	chr7:52964936-52964937	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs61189367	chr7:52964949-52964950	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs567614435	chr7:52964969-52964970	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs151146010	chr7:52964986-52964987	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs184259889	chr7:52964999-52965000	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs370031811	chr7:52965029-52965030	Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
30	rs530425416	chr7:52965040-52965041	Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
31	rs139061321	chr7:52965058-52965059	Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
32	rs75588705	chr7:52965063-52965064	Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
33	rs566479063	chr7:52965081-52965082	Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
34	rs539285993	chr7:52965110-52965111	Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
35	rs369099807	chr7:52965127-52965128	Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
36	rs538748812	chr7:52965134-52965135	Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
37	rs559009782	chr7:52965147-52965148	Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
38	rs10248339	chr7:52965158-52965159	Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
39	rs149904195	chr7:52965177-52965178	Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
40	rs555043611	chr7:52965182-52965183	Active TSS	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:120)

Disease	PMID	Source
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Biliary cancer	19435499	CNVD
Wilms tumour	21544195	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Lung cancer	18438408	CNVD
lymphocytic leukemia	21291569	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	22495311	CNVD
Glioblastoma multiforme	18628472	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21364760	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Gastric cancer	24379144	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Esophageal cancer	21851588	CNVD
Non-small cell lung cancer	17643093	CNVD
Ovarian cancer	18182111	CNVD
Colorectal cancer	16272173	CNVD
Glioblastoma multiforme	17369134	CNVD
Barrett''s esophagus	18559552	CNVD
head and neck squamous cell carcinoma	16943533	CNVD
Anaplastic thyroid cancer	17079354	CNVD
Basal-like breast cancer	17875215	CNVD
Colorectal cancer	16882699	CNVD
Colorectal cancer	18794099	CNVD
Gastrointestinal stromal cancer	17643098	CNVD
Lung cancer	18381415	CNVD
Metastatic colorectal cancer	17664472	CNVD
Non-small cell lung cancer	19255323	CNVD
Non-small cell lung cancer	17673923	CNVD
Non-small cell lung cancer	17975165	CNVD
Non-small cell lung cancer	19622585	CNVD
Ovarian cancer	16607561	CNVD
Squamous cell cancer	19670535	CNVD
head and neck squamous cell carcinoma	16818711	CNVD
small cell lung cancer	18829487	CNVD
Breast cancer	17661082	CNVD
Adenocarcinoma	19260752	CNVD
Esophageal cancer	16575012	CNVD
Lung adenocarcinoma	19138956	CNVD
Lung adenocarcinoma	18379350	CNVD
Lung adenocarcinoma	18258923	CNVD
Lung cancer	19138956	CNVD
Lung cancer	18379350	CNVD
Lung cancer	18258923	CNVD
Non-small cell lung cancer	18304967	CNVD
Non-small cell lung cancer	19451690	CNVD
Non-small cell lung cancer	19260752	CNVD
Non-small cell lung cancer	17079354	CNVD
Non-small cell lung cancer	18559607	CNVD
Rectal cancer	19506820	CNVD
Triple-negative breast cancer	18950515	CNVD
head and neck squamous cell carcinoma	18813952	CNVD
Non-small cell lung cancer	17504988	CNVD
Non-small cell lung cancer	16943533	CNVD
Non-small cell lung cancer	18509184	CNVD
head and neck squamous cell carcinoma	17538160	CNVD
Colorectal cancer	19712476	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Lung cancer	19671679	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
small cell lung cancer	20016488	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Breast cancer	21990379	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:52965000-52965800	Active TSS	Stomach Smooth Muscle	stomach

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