Variant report

Variant	rs554769682
Chromosome Location	chr7:52964762-52964763
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COBL-6	chr7:52964387-52965500	NONHSAT120623

Extended variants
information (count: 49 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:49 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888026	chr7:52588348-53013671	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1017323	chr7:52919418-52982242	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1020427	chr7:52922636-52989552	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1017676	chr7:52932139-53350524	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv1833818	chr7:52957634-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv1835227	chr7:52957634-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv1836272	chr7:52957634-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv819210	chr7:52959966-52964958	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3425258	chr7:52961958-52966056	Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv3342731	chr7:52962508-52966006	Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv3476111	chr7:52962807-52965185	Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3476110	chr7:52963068-52965031	Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv3517872	chr7:52963101-52965018	Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv18433	chr7:52963105-52965169	Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv821310	chr7:52963105-52965169	Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv3476113	chr7:52963116-52964993	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv3517873	chr7:52963117-52964971	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv3476112	chr7:52963118-52964991	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv3476109	chr7:52963133-52964969	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv3517875	chr7:52963146-52964979	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
22	esv3476114	chr7:52963200-52964916	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
23	esv3517876	chr7:52963200-52964916	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
24	esv12648	chr7:52963788-52965049	Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv606997	chr7:52963842-52964840	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
26	esv1834625	chr7:52963842-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
27	esv1834638	chr7:52963842-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
28	esv1836048	chr7:52963842-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
29	esv1837259	chr7:52963842-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
30	esv1837287	chr7:52963842-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
31	esv1837369	chr7:52963842-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
32	esv1837909	chr7:52963842-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
33	esv1838481	chr7:52963842-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
34	esv1839539	chr7:52963842-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
35	esv1841491	chr7:52963842-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
36	esv1841731	chr7:52963842-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
37	esv1842190	chr7:52963842-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
38	nsv606998	chr7:52963842-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
39	nsv538844	chr7:52963913-52989049	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
40	nsv607001	chr7:52963945-52964840	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
41	nsv607002	chr7:52963945-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
42	nsv607003	chr7:52963997-52964840	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
43	nsv607004	chr7:52963997-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
44	nsv607005	chr7:52964048-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
45	nsv607006	chr7:52964165-52964840	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
46	nsv607007	chr7:52964165-52964893	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
47	nsv824097	chr7:52964170-52964884	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases
48	esv1836080	chr7:52964336-52965371	Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases
49	esv13874	chr7:52964360-52964921	Inactive region	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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