Variant report

Variant	esv3483705
Chromosome Location	chr9:93162382-93194535
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:93169990..93172318-chr9:93276774..93279418,2	MCF-7	breast:
2	chr9:93181865..93183574-chr9:93187872..93189669,2	MCF-7	breast:
3	chr9:93158487..93160939-chr9:93163562..93165492,2	MCF-7	breast:
4	chr9:93181865..93183574-chr9:93187872..93189669,2	MCF-7	breast:
5	chr9:93193019..93195566-chr9:93205294..93207843,2	K562	blood:
6	chr9:93193711..93195735-chr9:93197522..93199241,2	K562	blood:
7	chr9:93190984..93193715-chr9:93194664..93197177,2	K562	blood:
8	chr9:93141218..93144173-chr9:93173013..93175871,2	MCF-7	breast:
9	chr9:93182306..93184415-chr9:93191861..93194493,2	MCF-7	breast:
10	chr9:93160898..93163217-chr9:93166360..93169284,2	K562	blood:
11	chr9:93167062..93168707-chr9:93170210..93172372,2	MCF-7	breast:
12	chr9:93155859..93157815-chr9:93161923..93163472,2	MCF-7	breast:
13	chr9:93160898..93163217-chr9:93166360..93169284,2	K562	blood:
14	chr9:93166885..93169792-chr9:93181807..93183365,2	MCF-7	breast:
15	chr9:93166885..93169792-chr9:93181807..93183365,2	MCF-7	breast:
16	chr9:93182306..93184415-chr9:93191861..93194493,2	MCF-7	breast:
17	chr9:93167062..93168707-chr9:93170210..93172372,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000231107	chromatin interactions

Extended variants
information (count: 1439 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:1439 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs554842561	chr9:93162391-93162392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs183176985	chr9:93162396-93162397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs187141960	chr9:93162492-93162493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs146103116	chr9:93162595-93162596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs1576290	chr9:93162602-93162603	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
6	rs570102694	chr9:93162626-93162627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs190346723	chr9:93162648-93162649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs140074464	chr9:93162660-93162661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs572569833	chr9:93162692-93162693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs573761533	chr9:93162733-93162734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs535153785	chr9:93162749-93162750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs558170550	chr9:93162868-93162869	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs143641880	chr9:93162879-93162880	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs146304537	chr9:93162896-93162897	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs544399977	chr9:93162902-93162903	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs182204142	chr9:93162910-93162911	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs563075795	chr9:93162941-93162942	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs534477212	chr9:93162975-93162976	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs34541611	chr9:93162984-93162985	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs533394699	chr9:93163002-93163003	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs576644472	chr9:93163010-93163011	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs2059602	chr9:93163120-93163121	Enhancers	n/a	n/a	Overlapped CNVs	mRNA abundance
23	rs35237879	chr9:93163129-93163130	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs200346244	chr9:93163138-93163139	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs559448876	chr9:93163139-93163140	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs56356755	chr9:93163142-93163143	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs138403217	chr9:93163143-93163144	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs10993338	chr9:93163146-93163147	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs193223570	chr9:93163154-93163155	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs80116279	chr9:93163157-93163158	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs185598135	chr9:93163184-93163185	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs150067146	chr9:93163227-93163228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs570321448	chr9:93163269-93163270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs529606403	chr9:93163303-93163304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs549533831	chr9:93163322-93163323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs566313696	chr9:93163382-93163383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs367566995	chr9:93163384-93163385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs62554282	chr9:93163467-93163468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs558307256	chr9:93163486-93163487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs547826471	chr9:93163502-93163503	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs189226908	chr9:93163504-93163505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs553831789	chr9:93163536-93163537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs145394670	chr9:93163553-93163554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs2114347	chr9:93163574-93163575	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs79054523	chr9:93163581-93163582	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs149201183	chr9:93163599-93163600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs550464376	chr9:93163612-93163613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs544655685	chr9:93163624-93163625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs374935791	chr9:93163634-93163635	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs4744373	chr9:93163703-93163704	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:74)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Biliary cancer	19435499	CNVD
small cell lung cancer	20016488	CNVD
Intracranial aneurysm	16715129	CNVD
Cardiac fibroma	18329553	CNVD
Mental retardation	21693067	CNVD
Glioma	17123091	CNVD
Mantle cell lymphoma	19029149	CNVD
Breast cancer	17133270	CNVD
Basal cell nevus syndrome	21572526	CNVD
Mental retardation	19951919	CNVD
Retinoblastoma	22278416	CNVD
9q22.3 microdeletion syndrome	22283845	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:154 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93158400-93162800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:93162800-93163200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:93163200-93167200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:93166600-93168400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:93166600-93169600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr9:93166800-93168400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr9:93166800-93168400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:93166800-93169000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr9:93167000-93168400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr9:93167000-93169000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr9:93167200-93167400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:93167200-93167600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:93167200-93167800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr9:93167200-93168400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr9:93167200-93168800	Enhancers	Brain Germinal Matrix	brain
16	chr9:93167200-93169000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:93167400-93170400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:93167600-93169400	Enhancers	Fetal Brain Male	brain
19	chr9:93167600-93170800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr9:93168400-93170600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr9:93169600-93174600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr9:93170400-93171200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:93170600-93171200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
24	chr9:93170800-93171200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr9:93171200-93172000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr9:93171200-93180800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:93173800-93174400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:93174000-93174400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
29	chr9:93174400-93174800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr9:93174400-93180800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:93174600-93175000	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr9:93174600-93175000	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr9:93174600-93175200	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr9:93174800-93175000	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr9:93174800-93176200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr9:93175000-93175200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr9:93175000-93177400	Active TSS	HUES64 Cell Line	embryonic stem cell
38	chr9:93175000-93177600	Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr9:93175000-93178000	Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr9:93175200-93177200	Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr9:93175200-93178600	Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr9:93175400-93176000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr9:93175400-93176200	Active TSS	H9 Cell Line	embryonic stem cell
44	chr9:93176000-93180800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr9:93176200-93177000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr9:93176200-93181600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr9:93177200-93177400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
48	chr9:93177400-93178000	Active TSS	ES-I3 Cell Line	embryonic stem cell
49	chr9:93177400-93180600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr9:93177600-93180800	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links