Variant report
Variant | rs10993338 |
---|---|
Chromosome Location | chr9:93163146-93163147 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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(count:2 , 50 per page) page:
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rs_ID | r2[population] |
---|---|
rs10115413 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10123250 | 0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10123806 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10124955 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10993249 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10993266 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10993273 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12115692 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12349297 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16906531 | 0.91[EUR][1000 genomes] |
rs28382334 | 0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs28488667 | 0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28510393 | 0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs28563830 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs4534243 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1041278 | chr9:92965701-93560454 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
2 | nsv482748 | chr9:93123377-93279526 | Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | nsv893565 | chr9:93130796-93392332 | Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
4 | esv3483705 | chr9:93162382-93194535 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | esv3483706 | chr9:93162396-93194531 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:93162800-93163200 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |