Variant report
Variant | rs10993249 |
---|---|
Chromosome Location | chr9:93144021-93144022 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr9:93141218..93144173-chr9:93173013..93175871,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10115413 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10117791 | 1.00[JPT][hapmap] |
rs10123250 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10123806 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10124955 | 0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10993266 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10993273 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10993338 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10993482 | 1.00[JPT][hapmap];0.88[MKK][hapmap] |
rs12115692 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs12348046 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs12348267 | 0.85[EUR][1000 genomes] |
rs12349297 | 0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12352242 | 0.85[EUR][1000 genomes] |
rs16906531 | 0.85[AMR][1000 genomes] |
rs2386533 | 1.00[JPT][hapmap] |
rs28382334 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs28488667 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28510393 | 0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs28563830 | 0.80[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs4534243 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs66488909 | 0.98[EUR][1000 genomes] |
rs7048728 | 0.85[EUR][1000 genomes] |
rs72741360 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs748121 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs7846966 | 0.85[EUR][1000 genomes] |
rs7854823 | 0.85[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1041278 | chr9:92965701-93560454 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
2 | nsv528155 | chr9:93106543-93152717 | Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv482748 | chr9:93123377-93279526 | Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
4 | nsv893565 | chr9:93130796-93392332 | Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
5 | nsv968584 | chr9:93143967-93149921 | Weak transcription Enhancers Genic enhancers Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:93142800-93147000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
2 | chr9:93143400-93145600 | Strong transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |