Variant report

Variant	rs12352242
Chromosome Location	chr9:93104019-93104020
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10117791	1.00[JPT][hapmap]
rs10123806	0.85[EUR][1000 genomes]
rs10124955	0.83[EUR][1000 genomes]
rs10993249	0.85[EUR][1000 genomes]
rs10993482	1.00[JPT][hapmap]
rs12348046	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12348267	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2386533	1.00[JPT][hapmap]
rs4604578	1.00[AFR][1000 genomes]
rs66488909	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7038972	1.00[AFR][1000 genomes]
rs7044957	1.00[AFR][1000 genomes]
rs7048728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741360	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs748121	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7846966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7854823	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051180	chr9:92869383-93141038	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv540169	chr9:92869383-93141038	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv893564	chr9:93074228-93116944	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93103000-93104200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:93103000-93105600	Weak transcription	HSMMtube	muscle
3	chr9:93103000-93105800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:93103000-93107600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:93103000-93111400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:93103200-93105600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:93103200-93105600	Weak transcription	HMEC	breast
8	chr9:93103200-93105600	Weak transcription	NHEK	skin
9	chr9:93103200-93105800	Weak transcription	HSMM	muscle
10	chr9:93103200-93106200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:93103200-93106200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:93103600-93106200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:93103800-93105800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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