Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10117791	1.00[JPT][hapmap]
rs10123250	0.83[EUR][1000 genomes]
rs10123806	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10124955	0.89[EUR][1000 genomes]
rs10993249	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10993266	0.83[EUR][1000 genomes]
rs10993273	0.83[EUR][1000 genomes]
rs10993482	1.00[JPT][hapmap]
rs12348046	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12348267	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12352242	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2386533	1.00[JPT][hapmap]
rs28382334	0.83[EUR][1000 genomes]
rs28488667	0.83[EUR][1000 genomes]
rs4534243	0.83[EUR][1000 genomes]
rs66488909	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7048728	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72741360	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846966	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7854823	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051180	chr9:92869383-93141038	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv540169	chr9:92869383-93141038	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv893564	chr9:93074228-93116944	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv528155	chr9:93106543-93152717	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs748121	CXCR4	trans	brain	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93111400-93112200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:93111600-93112400	Enhancers	Pancreas	Pancrea
3	chr9:93111600-93112600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:93111800-93112400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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