Variant report

Variant	rs12348046
Chromosome Location	chr9:93129805-93129806
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10115413	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs10123250	0.86[AMR][1000 genomes]
rs10123806	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10124955	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10993249	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10993266	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs10993273	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs12115692	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12348267	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12349297	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12352242	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16906531	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28382334	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs28488667	0.82[AMR][1000 genomes]
rs28510393	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4534243	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs66488909	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7048728	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72741360	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748121	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7846966	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7854823	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051180	chr9:92869383-93141038	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv540169	chr9:92869383-93141038	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv528155	chr9:93106543-93152717	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv516680	chr9:93116944-93138600	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv482748	chr9:93123377-93279526	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93125000-93131200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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