Variant report
Variant | rs10124955 |
---|---|
Chromosome Location | chr9:93138183-93138184 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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rs_ID | r2[population] |
---|---|
rs10115413 | 0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10123250 | 0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10123806 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10993249 | 0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10993266 | 0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10993273 | 0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10993338 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12115692 | 0.87[AFR][1000 genomes];0.96[ASN][1000 genomes] |
rs12348046 | 0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs12348267 | 0.83[EUR][1000 genomes] |
rs12349297 | 0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12352242 | 0.83[EUR][1000 genomes] |
rs28382334 | 0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs28488667 | 0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs28510393 | 0.87[AFR][1000 genomes];0.91[ASN][1000 genomes] |
rs28563830 | 0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs4534243 | 0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs66488909 | 0.95[EUR][1000 genomes] |
rs7048728 | 0.83[EUR][1000 genomes] |
rs72741360 | 0.83[EUR][1000 genomes] |
rs748121 | 0.89[EUR][1000 genomes] |
rs7846966 | 0.83[EUR][1000 genomes] |
rs7854823 | 0.83[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1051180 | chr9:92869383-93141038 | Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv540169 | chr9:92869383-93141038 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
3 | nsv1041278 | chr9:92965701-93560454 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
4 | nsv528155 | chr9:93106543-93152717 | Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv516680 | chr9:93116944-93138600 | Weak transcription Enhancers Genic enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
6 | nsv482748 | chr9:93123377-93279526 | Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
7 | nsv893565 | chr9:93130796-93392332 | Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:93131800-93141600 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |