Variant report

Variant	esv3485493
Chromosome Location	chr4:21457341-21458472
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPR125-6	chr4:21454062-21463909	ucscGeneNc_uc003gqj_1

Extended variants
information (count: 36 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs540202920	chr4:21457366-21457367	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs6844427	chr4:21457377-21457378	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs181046539	chr4:21457393-21457394	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs377297133	chr4:21457400-21457401	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs6843937	chr4:21457432-21457433	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs569820098	chr4:21457434-21457435	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs530882458	chr4:21457456-21457457	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs549570675	chr4:21457457-21457458	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs185523896	chr4:21457550-21457551	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs535198764	chr4:21457583-21457584	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs28459789	chr4:21457655-21457656	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs536945049	chr4:21457682-21457683	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs202168398	chr4:21457761-21457762	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs553749998	chr4:21457781-21457782	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs543178343	chr4:21457782-21457783	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs369890738	chr4:21457808-21457809	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs571959423	chr4:21457830-21457831	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs538646936	chr4:21457892-21457893	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs556948856	chr4:21457898-21457899	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs575317144	chr4:21457915-21457916	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs56343226	chr4:21457926-21457927	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs1380814	chr4:21457937-21457938	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs552809592	chr4:21457961-21457962	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs560089081	chr4:21458065-21458066	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs573004091	chr4:21458081-21458082	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs528835002	chr4:21458098-21458099	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs540031533	chr4:21458129-21458130	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs13144005	chr4:21458172-21458173	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs532229032	chr4:21458177-21458178	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs545024811	chr4:21458201-21458202	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs114242659	chr4:21458224-21458225	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs541137674	chr4:21458272-21458273	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs530920052	chr4:21458299-21458300	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs559155455	chr4:21458442-21458443	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs574561994	chr4:21458454-21458455	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs549239006	chr4:21458463-21458464	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Breast cancer	17603634	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
Oral squamous cell carcinoma	17134496	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Cancer	21183584	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Breast cancer	17133270	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	22183965	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Olfactory neuroblastoma	18408657	CNVD
Burkitt''s lymphoma	20823134	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	16774939	CNVD
Breast cancer	22522925	CNVD
Breast cancer	22737080	CNVD
Pancreatic cancer	17952125	CNVD
Cancer	22183965	CNVD
Gastric cancer	16891809	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21448400-21465600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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