Variant report

Variant	esv3488419
Chromosome Location	chr12:67536742-67537080
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs570057064	chr12:67536742-67536743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs537348043	chr12:67536752-67536753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs555916924	chr12:67536754-67536755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs568035733	chr12:67536781-67536782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs145825431	chr12:67536794-67536795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs1370408	chr12:67536861-67536862	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs148838480	chr12:67536878-67536879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs539683151	chr12:67536910-67536911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs143503511	chr12:67536926-67536927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs146420501	chr12:67536949-67536950	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs543685648	chr12:67536977-67536978	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs183067737	chr12:67536994-67536995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs574001108	chr12:67537006-67537007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs140848324	chr12:67537027-67537028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs529239101	chr12:67537039-67537040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs559431039	chr12:67537046-67537047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs187404106	chr12:67537051-67537052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ewing''s sarcoma	21437220	CNVD
Testicular germ cell tumor	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Neurodevelopmental disorder	22521361	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	21949216	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Glioblastoma multiforme	21080181	CNVD
Renal cell carcinoma	19461508	CNVD
Burkitt''s lymphoma	18698080	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17899364	CNVD
Colorectal cancer	16272173	CNVD
Glioblastoma multiforme	17387387	CNVD
liposarcomas	17372913	CNVD
Non-small cell lung cancer	24170126	CNVD
Cancer	16751803	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21785460	CNVD
small cell lung cancer	20016488	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	21390271	CNVD
Cancer	20164919	CNVD
Leukemia	18628472	CNVD
Fibroblasts	20926602	CNVD
Metanephric adenoma	20802469	CNVD
Follicular lymphoma	18703704	CNVD
Acute myeloid leukemia	21251322	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Lung cancer	16773561	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Mental retardation	17220210	CNVD
Osteopoikilosis	17220210	CNVD
short stature	17220210	CNVD
Burkitt''s lymphoma	20823134	CNVD
abnormal development	18461090	CNVD
Prostate cancer	18632612	CNVD
Ovarian neoplasms	16753589	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	16620391	CNVD
Neuroticism	17667963	CNVD
Breast cancer	21364760	CNVD
Urothelial cell carcinoma	18451213	CNVD
Breast cancer	22048815	CNVD
Congenital anomalies of the kidney and urinary tract	21113617	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Myelofibrosis	22110671	CNVD
Myxofibrosarcoma	16751306	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Lung cancer	17925434	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Disease	21505450	CNVD
craniofacial dysmorphism	21918468	CNVD
Glioblastoma multiforme	21569311	CNVD
Glioblastoma multiforme	19115005	CNVD
Cancer	20164920	CNVD
Lung adenocarcinoma	17982442	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67531400-67539200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:67535600-67539200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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