Variant report

Variant	rs1370408
Chromosome Location	chr12:67536861-67536862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10748069	1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs10748070	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748071	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748072	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10784611	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878569	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs10878570	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10878571	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11176589	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs11176591	1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs11176593	0.93[ASN][1000 genomes]
rs11176594	0.93[ASN][1000 genomes]
rs11176596	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11176597	1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs11832135	0.85[ASN][1000 genomes]
rs1526832	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569021	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1866068	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1918140	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2164746	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs4397936	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs4603385	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs4913317	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4913533	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs7132460	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7135360	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7299553	0.93[ASN][1000 genomes]
rs7300461	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7300759	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7485845	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7958157	0.97[ASN][1000 genomes]
rs7969451	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541524	chr12:67311057-67700349	Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	esv2470717	chr12:67536248-67537717	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2110585	chr12:67536637-67537233	Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3488430	chr12:67536670-67537159	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3488408	chr12:67536723-67537133	Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3488419	chr12:67536742-67537080	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3488397	chr12:67536804-67537057	Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3488441	chr12:67536818-67537055	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67531400-67539200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:67535600-67539200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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