Variant report

Variant	rs10878569
Chromosome Location	chr12:67523344-67523345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:67521731..67524693-chr12:67525306..67528055,2	MCF-7	breast:
2	chr12:67515801..67517539-chr12:67521669..67524496,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255976	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10748069	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10748070	0.85[ASN][1000 genomes]
rs10748071	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs10748072	0.85[ASN][1000 genomes]
rs10784606	0.81[CHD][hapmap]
rs10784611	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs10878570	0.87[ASN][1000 genomes]
rs10878571	0.85[ASN][1000 genomes]
rs11176589	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11176591	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11176593	0.92[ASN][1000 genomes]
rs11176594	0.92[ASN][1000 genomes]
rs11176596	0.85[ASN][1000 genomes]
rs11176597	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11832135	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11833346	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11833347	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11835794	1.00[CEU][hapmap];0.84[GIH][hapmap];0.95[TSI][hapmap]
rs12231102	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs1370408	0.85[ASN][1000 genomes]
rs1526832	0.85[ASN][1000 genomes]
rs1569021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17103378	0.85[CEU][hapmap]
rs17183676	0.85[CEU][hapmap]
rs17183711	0.85[CEU][hapmap]
rs1866068	0.85[CHB][hapmap]
rs1918140	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2164746	0.85[CHB][hapmap]
rs4397936	0.85[CHB][hapmap]
rs4603385	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4913317	0.92[ASN][1000 genomes]
rs4913533	0.85[CHB][hapmap]
rs7132460	0.88[ASN][1000 genomes]
rs7135360	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7299553	0.92[ASN][1000 genomes]
rs7300461	0.90[ASN][1000 genomes]
rs7300759	0.92[ASN][1000 genomes]
rs7485845	0.85[ASN][1000 genomes]
rs7958157	0.87[ASN][1000 genomes]
rs7961790	0.84[EUR][1000 genomes]
rs7962241	0.84[EUR][1000 genomes]
rs7969451	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541524	chr12:67311057-67700349	Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10878569	GRIP1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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