Variant report
| Variant | rs17183711 |
|---|---|
| Chromosome Location | chr12:67519516-67519517 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000256248 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10506541 | 0.87[AFR][1000 genomes] |
| rs10878569 | 0.85[CEU][hapmap] |
| rs11176555 | 0.84[CEU][hapmap] |
| rs11611265 | 0.89[CEU][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes] |
| rs11614672 | 0.87[AFR][1000 genomes] |
| rs11833346 | 0.83[EUR][1000 genomes] |
| rs11833347 | 0.83[EUR][1000 genomes] |
| rs11835794 | 0.85[CEU][hapmap] |
| rs12231102 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs17103378 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs17183558 | 0.85[CEU][hapmap] |
| rs17183565 | 0.85[CEU][hapmap] |
| rs17183669 | 0.92[CEU][hapmap] |
| rs17183676 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17781148 | 0.87[AFR][1000 genomes] |
| rs17781166 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17781196 | 0.92[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes] |
| rs74098199 | 0.87[AFR][1000 genomes] |
| rs74101218 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7961790 | 0.90[EUR][1000 genomes] |
| rs7962241 | 0.90[EUR][1000 genomes] |
| rs7974866 | 0.81[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv541524 | chr12:67311057-67700349 | Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv559212 | chr12:67373549-67850925 | Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
