Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11176555	0.91[CEU][hapmap]
rs11611265	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11612333	0.81[EUR][1000 genomes]
rs11614672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12231102	0.92[CEU][hapmap]
rs1344930	0.80[EUR][1000 genomes]
rs1657982	0.80[EUR][1000 genomes]
rs17103378	0.92[CEU][hapmap]
rs17183558	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs17183565	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs17183655	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17183669	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17183676	0.91[CEU][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes]
rs17183711	0.92[CEU][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes]
rs17781064	0.96[EUR][1000 genomes]
rs17781088	0.94[EUR][1000 genomes]
rs17781148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17781166	0.93[AFR][1000 genomes]
rs17781196	1.00[CEU][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101218	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541524	chr12:67311057-67700349	Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv899217	chr12:67472631-67501987	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67491800-67501800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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