Variant report
| Variant | rs11611265 |
|---|---|
| Chromosome Location | chr12:67500327-67500328 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:67462252..67464052-chr12:67500249..67504193,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000256248 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10506541 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11176555 | 0.89[CEU][hapmap] |
| rs11612333 | 0.81[EUR][1000 genomes] |
| rs11614672 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12231102 | 0.89[CEU][hapmap] |
| rs1344930 | 0.80[EUR][1000 genomes] |
| rs1657982 | 0.80[EUR][1000 genomes] |
| rs17103378 | 0.89[CEU][hapmap] |
| rs17183558 | 0.89[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs17183565 | 0.89[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs17183655 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17183669 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17183676 | 0.89[CEU][hapmap];0.82[YRI][hapmap];0.93[AFR][1000 genomes] |
| rs17183711 | 0.89[CEU][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes] |
| rs17781064 | 0.96[EUR][1000 genomes] |
| rs17781088 | 0.94[EUR][1000 genomes] |
| rs17781148 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17781166 | 0.93[AFR][1000 genomes] |
| rs17781196 | 1.00[CEU][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74098199 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74101218 | 0.87[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv541524 | chr12:67311057-67700349 | Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv559212 | chr12:67373549-67850925 | Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| 3 | nsv899217 | chr12:67472631-67501987 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:67491800-67501800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
